Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1421 ATGCGTCTTCTTCTTCTTCTCCTTTGTCTTCTGCAACTCCACATTCATCACTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCTCTTCTCTCCCTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTCTCCTCATGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACCTGCGATCTTCGTCGCCATGTCACTGCCTTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCCCTTTCCCATGATGTTGCCTTTCTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGACTTTTCCGGTCCAATCCCCCCGGAGATTTCTTCAGTCTCTTCGCTTCGGCTCCTTAACCTGTCTAACAATGTGTTCGATGGGTCGTTCCCTTCACGGCTTTCGCAGCTCCAGAATCTCCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTCCCCATTGTGGTCACGGAAATGTCGAGCCTCCGCCATTTGCATTTGGGTGGAAATTTCTTTTCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATACCGCCGGAGATCGGAAACCTCACGAACCTTCGCGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAATTTGTCGAAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGCCGGATTCCCCCGGAGCTCGGAAAGCTGCAGAATCTCGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAACAGCTTGAAATCTTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCCCCTCGTTCGCCCAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGATCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCGCTTAATCGCATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCAAAGCTCTCTCAGGTGGAGTTACAGGACAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCGATCTCATTGAATCTCGGCCAGATTAGTCTCTCAAACAACCGACTCACCGGGTCAATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTACTTGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGACGGTTACAGCAACTTTCGAAGATAGATTTCAGTAACAATAAGCTGTCGGGTCCAATCGCGCCGGAGGTTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACCTGAATCTCTCAAAAAACCATTTAGTCGGCGGAATCCCTGCTTCCATATCCAGCATGCAGAGTTTAACCTCCGTTGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAGGGCCCCCTCTCCGCTTCTCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGTTAAAGAGAGCCAGCGAGTCTCGAGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCCGGAATTGTGTATAAAGGGGCCATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGAAGGATTCGTCATCGACATATTGTAAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGTTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCTGCTAAAGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCGATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACGCTAAAAGTTGACGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAGCTTGTTAGTGGAAGAAAACCGGTCGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGCAGTGAAAATCCTTGATCCAAGGCTGTCCTCCGTGCCTCTCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTCGAGGAACAGGCGGTCGAGCGTCCGACAATGCGGGAAGTGATCCAAATCCTATCAGAGATTCCTCAGCCACCATGTTCAAAACAGGGAGGAGATTCAACACTCCCCAACTCCTCACCACCCCCACCACCACCACCAGCTGCCGATTTAGACCTTCCAACAACAGGAGCCAAGAACAAAAAAGACCATCAGCAGCAGCCGCCACCAGATCTTCTTAGCATTTGA 3051 48.08 MRLLLLLLCLLQLHIHHSLSARVSEYRALLSLKTSITGDPKSSLSSWNASTSHCTWFGVTCDLRRHVTALDLSGLGLSGSLSHDVAFLRFLTNLSLAANDFSGPIPPEISSVSSLRLLNLSNNVFDGSFPSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMSSLRHLHLGGNFFSGRIPPEVGRMQSLEYLAVSGNELSGPIPPEIGNLTNLRELYIGYFNAYDGGIPAEIGNLSKLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGELNSLKSLDLSNNMLVGEIPPSFAQLKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEVSQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEAVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKQGGDSTLPNSSPPPPPPPAADLDLPTTGAKNKKDHQQQPPPDLLSI 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33009925 33013324 - CrPI670011_04g014210.1 Cre04g1421 495725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1421 1016 SMART LRR_typ_2 281 304 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 112 136 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 329 353 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 160 184 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 354 377 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 569 592 IPR003591 -
Cre04g1421 1016 SMART LRR_typ_2 497 521 IPR003591 -
Cre04g1421 1016 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1421 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 976 - -
Cre04g1421 1016 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Cre04g1421 1016 SUPERFAMILY RNI-like 70 391 - -
Cre04g1421 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cre04g1421 1016 Gene3D Ribonuclease Inhibitor 239 349 IPR032675 -
Cre04g1421 1016 MobiDBLite consensus disorder prediction 964 1016 - -
Cre04g1421 1016 Gene3D Ribonuclease Inhibitor 178 234 IPR032675 -
Cre04g1421 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cre04g1421 1016 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Cre04g1421 1016 MobiDBLite consensus disorder prediction 1001 1016 - -
Cre04g1421 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1421 1016 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
Cre04g1421 1016 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Cre04g1421 1016 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Cre04g1421 1016 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 SUPERFAMILY L domain-like 298 614 - -
Cre04g1421 1016 Gene3D Ribonuclease Inhibitor 354 618 IPR032675 -
Cre04g1421 1016 SMART serkin_6 689 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1421 1016 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cre04g1421 1016 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 963 IPR050647 -
Cre04g1421 1016 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Cre04g1421 1016 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1421 1016 MobiDBLite consensus disorder prediction 978 992 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0129 Cre-Chr4:3150143 Cre04g1421 Cre-Chr4:33009925 6.80E-58 dispersed
Cre04g1421 Cre-Chr4:33009925 Cre10g0980 Cre-Chr10:14300229 1.70E-201 dispersed
Cre09g2026 Cre-Chr9:39353039 Cre04g1421 Cre-Chr4:33009925 4.00E-56 dispersed
Cre04g1420 Cre-Chr4:32992807 Cre04g1421 Cre-Chr4:33009925 3.80E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64064 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1421 - - - 0.0