Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1424 ATGAAAAACAACTTCTATAAATTCTCCCAATCTTCTTCTTCACTTCATTTCATTCTTGGCTTTTTGGCTCTCATTTTTCAAACCTTCTCCAAGCTCATAGATCCGGAGAAATTAAACCAAAGTTCATCATATTTTTCCAATGGAAATCTCATCTGCAAAATGGAATTGGAATCTTCATTCATGGATGATTTGGAAATGAACCCTTTCGATTGCACACTAGAGGATCTAAGCAATTTCCAAGCATTCTCCGACGAAAGCTACACATCCCACGTAGATCTAGAGAATTCCGTACAAACTCCGGCGGCGCCGCCGGCAAAGCAGGCGAGGACCACCGGCAGTAGCCGTAAAATTGCTTCGATGGCTGCTTCTTCTTCCTCGTCGCACATCATTTCATTTGGGAACTCCCATTCTTCTTGTAACCCCAAATTGGAGATGGGGTGTGAATTAAGTGGGAACATTGTTGATTTGTCTTCGGTGGTTGCTCAACCTTGCAATGACAATAATAATAATAACAATAATAATAATAATACCCCAAATTATTATTATTCCCCAAGAAATCATGGCGTGGGAATCAAGAGATCGGCTGCGGCTATCAATAACAACCGCAGCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAAAGAAAGCGTAGAGAAAAGCTCAGCCAGCGATTTGTCGCTCTTTCCGCTCTTATTCCTGACCTCAAGAAGATGGACAAAGCCTCCATTCTTGCGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAATGAACAAGCAGCCAAAGGAACAATGGAATCAGTGGTGTTTGTGAACAGATCCGATGACGTCTCTACCATCGTCGTTGGTGACGATTCCTCAGAGGAAAACAGCTCGTTGTCGGACGGAGCAATTCCGGACATAGAAGCAAGAGTGTCCGGGAAGGATGTTCTGTTAAGGATTCATGGCAAGAAATGCAAAGGCTGTCTTTCAAATATACTAAATCAAATAGAGAAGCTTAATCTAACAGTTCTCAACTCCAGTGCCTTGCCATTTGGCAATTTCAGGCTTGATATTACCATTATTGCTCAGATGGATGATGATTTTTCCATGACGGTGAAGGAACTAGTGCAGAAACTAAGACAGGCTTCTCTTGAATTCGTCTAA 1161 42.03 MKNNFYKFSQSSSSLHFILGFLALIFQTFSKLIDPEKLNQSSSYFSNGNLICKMELESSFMDDLEMNPFDCTLEDLSNFQAFSDESYTSHVDLENSVQTPAAPPAKQARTTGSSRKIASMAASSSSSHIISFGNSHSSCNPKLEMGCELSGNIVDLSSVVAQPCNDNNNNNNNNNNTPNYYYSPRNHGVGIKRSAAAINNNRSPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILADAITYIKDLQERLKVANEQAAKGTMESVVFVNRSDDVSTIVVGDDSSEENSSLSDGAIPDIEARVSGKDVLLRIHGKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33044068 33046588 - CrPI670011_04g014240.1 Cre04g1424 495728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1424 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983(InterPro)
Cre04g1424 386 PANTHER BHLH TRANSCRIPTION FACTOR 53 382 IPR052610 -
Cre04g1424 386 Gene3D - 197 268 IPR036638 GO:0046983(InterPro)
Cre04g1424 386 Pfam Helix-loop-helix DNA-binding domain 210 255 IPR011598 GO:0046983(InterPro)
Cre04g1424 386 Coils Coil 244 271 - -
Cre04g1424 386 MobiDBLite consensus disorder prediction 96 118 - -
Cre04g1424 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 266 IPR036638 GO:0046983(InterPro)
Cre04g1424 386 SMART finulus 211 260 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1077 Cre-Chr2:8979916 Cre04g1424 Cre-Chr4:33044068 1.40E-43 dispersed
Cre04g1424 Cre-Chr4:33044068 Cre09g1145 Cre-Chr9:12527079 1.80E-15 dispersed
Cre04g1423 Cre-Chr4:33033996 Cre04g1424 Cre-Chr4:33044068 6.30E-46 tandem
Cre04g1424 Cre-Chr4:33044068 Cre04g1425 Cre-Chr4:33064871 6.20E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53483 PF00010 HLH 6.80E-12 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1424 - - - 0.0