Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1424 | ATGAAAAACAACTTCTATAAATTCTCCCAATCTTCTTCTTCACTTCATTTCATTCTTGGCTTTTTGGCTCTCATTTTTCAAACCTTCTCCAAGCTCATAGATCCGGAGAAATTAAACCAAAGTTCATCATATTTTTCCAATGGAAATCTCATCTGCAAAATGGAATTGGAATCTTCATTCATGGATGATTTGGAAATGAACCCTTTCGATTGCACACTAGAGGATCTAAGCAATTTCCAAGCATTCTCCGACGAAAGCTACACATCCCACGTAGATCTAGAGAATTCCGTACAAACTCCGGCGGCGCCGCCGGCAAAGCAGGCGAGGACCACCGGCAGTAGCCGTAAAATTGCTTCGATGGCTGCTTCTTCTTCCTCGTCGCACATCATTTCATTTGGGAACTCCCATTCTTCTTGTAACCCCAAATTGGAGATGGGGTGTGAATTAAGTGGGAACATTGTTGATTTGTCTTCGGTGGTTGCTCAACCTTGCAATGACAATAATAATAATAACAATAATAATAATAATACCCCAAATTATTATTATTCCCCAAGAAATCATGGCGTGGGAATCAAGAGATCGGCTGCGGCTATCAATAACAACCGCAGCCCTTTGCTTGCTCAAGATCATGTCATAGCTGAAAGAAAGCGTAGAGAAAAGCTCAGCCAGCGATTTGTCGCTCTTTCCGCTCTTATTCCTGACCTCAAGAAGATGGACAAAGCCTCCATTCTTGCGGATGCAATAACATACATCAAAGATCTTCAAGAACGTTTGAAGGTTGCAAATGAACAAGCAGCCAAAGGAACAATGGAATCAGTGGTGTTTGTGAACAGATCCGATGACGTCTCTACCATCGTCGTTGGTGACGATTCCTCAGAGGAAAACAGCTCGTTGTCGGACGGAGCAATTCCGGACATAGAAGCAAGAGTGTCCGGGAAGGATGTTCTGTTAAGGATTCATGGCAAGAAATGCAAAGGCTGTCTTTCAAATATACTAAATCAAATAGAGAAGCTTAATCTAACAGTTCTCAACTCCAGTGCCTTGCCATTTGGCAATTTCAGGCTTGATATTACCATTATTGCTCAGATGGATGATGATTTTTCCATGACGGTGAAGGAACTAGTGCAGAAACTAAGACAGGCTTCTCTTGAATTCGTCTAA | 1161 | 42.03 | MKNNFYKFSQSSSSLHFILGFLALIFQTFSKLIDPEKLNQSSSYFSNGNLICKMELESSFMDDLEMNPFDCTLEDLSNFQAFSDESYTSHVDLENSVQTPAAPPAKQARTTGSSRKIASMAASSSSSHIISFGNSHSSCNPKLEMGCELSGNIVDLSSVVAQPCNDNNNNNNNNNNTPNYYYSPRNHGVGIKRSAAAINNNRSPLLAQDHVIAERKRREKLSQRFVALSALIPDLKKMDKASILADAITYIKDLQERLKVANEQAAKGTMESVVFVNRSDDVSTIVVGDDSSEENSSLSDGAIPDIEARVSGKDVLLRIHGKKCKGCLSNILNQIEKLNLTVLNSSALPFGNFRLDITIIAQMDDDFSMTVKELVQKLRQASLEFV | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33044068 | 33046588 | - | CrPI670011_04g014240.1 | Cre04g1424 | 495728 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1424 | 386 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 205 | 254 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1424 | 386 | PANTHER | BHLH TRANSCRIPTION FACTOR | 53 | 382 | IPR052610 | - | |
Cre04g1424 | 386 | Gene3D | - | 197 | 268 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1424 | 386 | Pfam | Helix-loop-helix DNA-binding domain | 210 | 255 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1424 | 386 | Coils | Coil | 244 | 271 | - | - | |
Cre04g1424 | 386 | MobiDBLite | consensus disorder prediction | 96 | 118 | - | - | |
Cre04g1424 | 386 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 210 | 266 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1424 | 386 | SMART | finulus | 211 | 260 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1077 | Cre-Chr2:8979916 | Cre04g1424 | Cre-Chr4:33044068 | 1.40E-43 | dispersed | |
Cre04g1424 | Cre-Chr4:33044068 | Cre09g1145 | Cre-Chr9:12527079 | 1.80E-15 | dispersed | |
Cre04g1423 | Cre-Chr4:33033996 | Cre04g1424 | Cre-Chr4:33044068 | 6.30E-46 | tandem | |
Cre04g1424 | Cre-Chr4:33044068 | Cre04g1425 | Cre-Chr4:33064871 | 6.20E-48 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53483 | PF00010 | HLH | 6.80E-12 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1424 | - | - | - | 0.0 |