Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1437 ATGGAGCTCAGTCAACATGGTTTCTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGGAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGATTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCATGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTACTGTCTACAGTCAACACACTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTTGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1026 41.42 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETPPFISQEEMSNKNSGYPPAAMEEEELDFIEIETAPSVCKVEMEQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33194742 33196068 - CrPI670011_04g014370.1 Cre04g1437 495741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1437 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 116 336 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre04g1437 341 SMART finulus 172 221 IPR011598 GO:0046983(InterPro)
Cre04g1437 341 Pfam Plant bHLH transcription factor, ACT-like domain 259 330 IPR054502 -
Cre04g1437 341 Pfam Helix-loop-helix DNA-binding domain 173 215 IPR011598 GO:0046983(InterPro)
Cre04g1437 341 Gene3D - 158 229 IPR036638 GO:0046983(InterPro)
Cre04g1437 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983(InterPro)
Cre04g1437 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1437 Cre-Chr4:33194742 Cre05g1433 Cre-Chr5:17564623 4.20E-32 dispersed
Cre02g0757 Cre-Chr2:4419432 Cre04g1437 Cre-Chr4:33194742 2.50E-17 transposed
Cre11g1904 Cre-Chr11:30779070 Cre04g1437 Cre-Chr4:33194742 2.20E-70 wgd
Cre04g1437 Cre-Chr4:33194742 Cre08g1131 Cre-Chr8:24491564 1.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53486 PF00010 HLH 2.10E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1437 - - - 0.0