Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1442 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACAGTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTGCTGCTGAATCCAATTTCAGATGTCAAGTTATGGCAGAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAGCTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTTAGCTTACAAAGCATCCGAATTAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCATCAAGAAAATATAGAGTTGAGCAATAAAGTAAACCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCGAGATCAGAGATGAACTTGGCGACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCCGCCGCCGCCGCCGCCGTCCCTATTGCAAGCGACGCCCTGCGTGTACCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 717 41.14 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIQSVIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAAAAAAVPIASDALRVPIHLQLSPPEQQA 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 33243334 33246371 - CrPI670011_04g014420.1 Cre04g1442 495746
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1442 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g1442 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 Coils Coil 123 143 - -
Cre04g1442 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre04g1442 238 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 Coils Coil 86 113 - -
Cre04g1442 238 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1442 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g1442 238 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1442 Cre-Chr4:33243334 Cre04g2020 Cre-Chr4:37497982 9.70E-36 dispersed
Cre10g1145 Cre-Chr10:23605955 Cre04g1442 Cre-Chr4:33243334 6.70E-28 wgd
Cre11g1892 Cre-Chr11:30673026 Cre04g1442 Cre-Chr4:33243334 3.60E-22 wgd
Cre04g1442 Cre-Chr4:33243334 Cre08g1110 Cre-Chr8:24270314 5.20E-29 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53487 PF01486 K-box 1.00E-23 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1442 K09264 - csv:101206453 426.402