Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1443 ATGGAGAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACGACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGACGTGGTTTGGAACCGGCCAAATAGAGCTAGTGCCACTGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAGATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGACGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAGTGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGTGTCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAACCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGGATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGGATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAACATAATCTATCTTACACAGAGAAGACATACAGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAATAA 2064 45.78 MERQQKKLEFPAMAALLFLFFSLSLANDNPRQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNRPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGVPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWDRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTGYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLVEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33256604 33260863 + CrPI670011_04g014430.1 Cre04g1443 495747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1443 687 Gene3D - 377 479 - -
Cre04g1443 687 Pfam Rhamnogalacturonate lyase family 60 248 IPR010325 -
Cre04g1443 687 CDD RGL4_C 491 684 - -
Cre04g1443 687 Gene3D - 487 683 - -
Cre04g1443 687 FunFam Rhamnogalacturonate lyase B 377 477 - -
Cre04g1443 687 SUPERFAMILY Galactose mutarotase-like 62 347 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre04g1443 687 SUPERFAMILY Galactose-binding domain-like 487 684 IPR008979 -
Cre04g1443 687 Pfam Polysaccharide lyase family 4, domain II 403 475 IPR029413 -
Cre04g1443 687 CDD RGL4_N 58 342 - -
Cre04g1443 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 685 IPR051850 -
Cre04g1443 687 SUPERFAMILY Starch-binding domain-like 378 479 IPR013784 GO:0030246(InterPro)
Cre04g1443 687 Pfam Polysaccharide lyase family 4, domain III 489 683 IPR029411 -
Cre04g1443 687 CDD RGL4_M 380 477 IPR029413 -
Cre04g1443 687 Gene3D - 58 347 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1443 Cre-Chr4:33256604 Cre11g1890 Cre-Chr11:30650641 1.60E-224 dispersed
Cre10g0920 Cre-Chr10:10884813 Cre04g1443 Cre-Chr4:33256604 1.90E-238 transposed
Cre11g1889 Cre-Chr11:30627723 Cre04g1443 Cre-Chr4:33256604 1.30E-211 wgd
Cre04g1443 Cre-Chr4:33256604 Cre08g1094 Cre-Chr8:24072451 2.80E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1443 K18195 - csv:101206696 1133.24