Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1458 ATGCATCTAATAGTTGAGAAGATACAACAGTTCAAAGTGAAGATTGAGCATAGTGCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGCAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAAACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTCGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAATCAAAACCAGATCAGTCTGATTTATGGGCTCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATAAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTTAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTGACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCGGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACAAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA 2466 44.65 MHLIVEKIQQFKVKIEHSALILNLLRQSLADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPRVVKVERAEAKSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRYPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARILTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYKNLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33353671 33368154 - CrPI670011_04g014580.1 Cre04g1458 495762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1458 821 MobiDBLite consensus disorder prediction 276 302 - -
Cre04g1458 821 FunFam Transcription factor, MADS-box 97 167 - -
Cre04g1458 821 SUPERFAMILY SRF-like 87 167 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 PRINTS MADS domain signature 122 143 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 PRINTS MADS domain signature 87 107 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 PRINTS MADS domain signature 107 122 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 94 141 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 Coils Coil 178 198 - -
Cre04g1458 821 ProSiteProfiles MADS-box domain profile. 85 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 Pfam K-box region 175 255 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g1458 821 Coils Coil 205 225 - -
Cre04g1458 821 Coils Coil 227 261 - -
Cre04g1458 821 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 305 820 IPR052272 -
Cre04g1458 821 CDD MADS_MEF2_like 86 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre04g1458 821 Pfam GDP-fucose protein O-fucosyltransferase 409 758 IPR019378 -
Cre04g1458 821 Gene3D - 97 166 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 SMART madsneu2 85 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre04g1458 821 ProSiteProfiles K-box domain profile. 171 261 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre04g1458 821 CDD O-FucT_plant 409 764 IPR024709 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1458 Cre-Chr4:33353671 Cre09g1901 Cre-Chr9:37748333 4.80E-82 dispersed
Cre09g1620 Cre-Chr9:33150933 Cre04g1458 Cre-Chr4:33353671 9.10E-20 dispersed
Cre10g1157 Cre-Chr10:23827779 Cre04g1458 Cre-Chr4:33353671 1.70E-13 dispersed
Cre10g1367 Cre-Chr10:27326804 Cre04g1458 Cre-Chr4:33353671 1.00E-22 dispersed
Cre11g1892 Cre-Chr11:30673026 Cre04g1458 Cre-Chr4:33353671 6.30E-19 dispersed
Cre01g0872 Cre-Chr1:11802589 Cre04g1458 Cre-Chr4:33353671 4.50E-78 transposed
Cre03g0965 Cre-Chr3:8491951 Cre04g1458 Cre-Chr4:33353671 6.50E-79 transposed
Cre05g2752 Cre-Chr5:38349874 Cre04g1458 Cre-Chr4:33353671 6.70E-88 transposed
Cre08g0040 Cre-Chr8:996505 Cre04g1458 Cre-Chr4:33353671 8.50E-86 transposed
Cre10g1125 Cre-Chr10:23271488 Cre04g1458 Cre-Chr4:33353671 5.90E-47 wgd
Cre04g1458 Cre-Chr4:33353671 Cre08g1109 Cre-Chr8:24249326 2.60E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53489 PF10250 O-FucT 9.90E-63 CL0113 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1458 - - - 0.0