Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1458 | ATGCATCTAATAGTTGAGAAGATACAACAGTTCAAAGTGAAGATTGAGCATAGTGCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGCAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAAACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTCGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAATCAAAACCAGATCAGTCTGATTTATGGGCTCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATAAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTTAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTGACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCGGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACAAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA | 2466 | 44.65 | MHLIVEKIQQFKVKIEHSALILNLLRQSLADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPRVVKVERAEAKSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRYPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARILTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYKNLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS | 821 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33353671 | 33368154 | - | CrPI670011_04g014580.1 | Cre04g1458 | 495762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1458 | 821 | MobiDBLite | consensus disorder prediction | 276 | 302 | - | - | |
Cre04g1458 | 821 | FunFam | Transcription factor, MADS-box | 97 | 167 | - | - | |
Cre04g1458 | 821 | SUPERFAMILY | SRF-like | 87 | 167 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | PRINTS | MADS domain signature | 122 | 143 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | PRINTS | MADS domain signature | 87 | 107 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | PRINTS | MADS domain signature | 107 | 122 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 94 | 141 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | Coils | Coil | 178 | 198 | - | - | |
Cre04g1458 | 821 | ProSiteProfiles | MADS-box domain profile. | 85 | 145 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | Pfam | K-box region | 175 | 255 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre04g1458 | 821 | Coils | Coil | 205 | 225 | - | - | |
Cre04g1458 | 821 | Coils | Coil | 227 | 261 | - | - | |
Cre04g1458 | 821 | PANTHER | O-FUCOSYLTRANSFERASE 2-RELATED | 305 | 820 | IPR052272 | - | |
Cre04g1458 | 821 | CDD | MADS_MEF2_like | 86 | 161 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cre04g1458 | 821 | Pfam | GDP-fucose protein O-fucosyltransferase | 409 | 758 | IPR019378 | - | |
Cre04g1458 | 821 | Gene3D | - | 97 | 166 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | SMART | madsneu2 | 85 | 144 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre04g1458 | 821 | ProSiteProfiles | K-box domain profile. | 171 | 261 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre04g1458 | 821 | CDD | O-FucT_plant | 409 | 764 | IPR024709 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1458 | Cre-Chr4:33353671 | Cre09g1901 | Cre-Chr9:37748333 | 4.80E-82 | dispersed | |
Cre09g1620 | Cre-Chr9:33150933 | Cre04g1458 | Cre-Chr4:33353671 | 9.10E-20 | dispersed | |
Cre10g1157 | Cre-Chr10:23827779 | Cre04g1458 | Cre-Chr4:33353671 | 1.70E-13 | dispersed | |
Cre10g1367 | Cre-Chr10:27326804 | Cre04g1458 | Cre-Chr4:33353671 | 1.00E-22 | dispersed | |
Cre11g1892 | Cre-Chr11:30673026 | Cre04g1458 | Cre-Chr4:33353671 | 6.30E-19 | dispersed | |
Cre01g0872 | Cre-Chr1:11802589 | Cre04g1458 | Cre-Chr4:33353671 | 4.50E-78 | transposed | |
Cre03g0965 | Cre-Chr3:8491951 | Cre04g1458 | Cre-Chr4:33353671 | 6.50E-79 | transposed | |
Cre05g2752 | Cre-Chr5:38349874 | Cre04g1458 | Cre-Chr4:33353671 | 6.70E-88 | transposed | |
Cre08g0040 | Cre-Chr8:996505 | Cre04g1458 | Cre-Chr4:33353671 | 8.50E-86 | transposed | |
Cre10g1125 | Cre-Chr10:23271488 | Cre04g1458 | Cre-Chr4:33353671 | 5.90E-47 | wgd | |
Cre04g1458 | Cre-Chr4:33353671 | Cre08g1109 | Cre-Chr8:24249326 | 2.60E-197 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53489 | PF10250 | O-FucT | 9.90E-63 | CL0113 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1458 | - | - | - | 0.0 |