Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1465 ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGCTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCCATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCTGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTATCTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 39.45 MADSFYCTENANICFDDQFDCNATNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLSAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33446872 33448746 + CrPI670011_04g014650.1 Cre04g1465 495769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1465 364 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Cre04g1465 364 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
Cre04g1465 364 Pfam Cyclin, C-terminal domain 196 287 IPR004367 -
Cre04g1465 364 FunFam D2/4-type cyclin 77 189 - -
Cre04g1465 364 MobiDBLite consensus disorder prediction 327 364 - -
Cre04g1465 364 SMART Cyclin_C_2 196 307 IPR004367 -
Cre04g1465 364 FunFam D6-type cyclin 190 281 - -
Cre04g1465 364 CDD CYCLIN_AtCycD-like_rpt2 196 283 - -
Cre04g1465 364 Gene3D - 65 282 - -
Cre04g1465 364 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
Cre04g1465 364 SMART cyclin_7 99 187 IPR013763 -
Cre04g1465 364 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Cre04g1465 364 Gene3D - 77 194 - -
Cre04g1465 364 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
Cre04g1465 364 PANTHER CYCLINS 61 281 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0981 Cre-Chr2:7216459 Cre04g1465 Cre-Chr4:33446872 3.10E-36 dispersed
Cre04g1332 Cre-Chr4:32140629 Cre04g1465 Cre-Chr4:33446872 2.40E-35 dispersed
Cre04g1465 Cre-Chr4:33446872 Cre08g1559 Cre-Chr8:28237832 1.20E-45 dispersed
Cre01g0408 Cre-Chr1:3444174 Cre04g1465 Cre-Chr4:33446872 1.60E-47 transposed
Cre02g1449 Cre-Chr2:26114397 Cre04g1465 Cre-Chr4:33446872 1.00E-32 transposed
Cre04g0899 Cre-Chr4:27659000 Cre04g1465 Cre-Chr4:33446872 2.60E-22 transposed
Cre05g2240 Cre-Chr5:34024661 Cre04g1465 Cre-Chr4:33446872 5.80E-32 transposed
Cre10g1170 Cre-Chr10:24034506 Cre04g1465 Cre-Chr4:33446872 1.90E-53 transposed
Cre04g1465 Cre-Chr4:33446872 Cre08g1092 Cre-Chr8:24046681 5.40E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1465 K18810 - csv:101209378 567.0