Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1465 | ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGCTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCCATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCTGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTATCTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA | 1095 | 39.45 | MADSFYCTENANICFDDQFDCNATNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLSAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33446872 | 33448746 | + | CrPI670011_04g014650.1 | Cre04g1465 | 495769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1465 | 364 | Pfam | Cyclin, N-terminal domain | 65 | 193 | IPR006671 | - | |
Cre04g1465 | 364 | CDD | CYCLIN_AtCycD-like_rpt1 | 94 | 191 | - | - | |
Cre04g1465 | 364 | Pfam | Cyclin, C-terminal domain | 196 | 287 | IPR004367 | - | |
Cre04g1465 | 364 | FunFam | D2/4-type cyclin | 77 | 189 | - | - | |
Cre04g1465 | 364 | MobiDBLite | consensus disorder prediction | 327 | 364 | - | - | |
Cre04g1465 | 364 | SMART | Cyclin_C_2 | 196 | 307 | IPR004367 | - | |
Cre04g1465 | 364 | FunFam | D6-type cyclin | 190 | 281 | - | - | |
Cre04g1465 | 364 | CDD | CYCLIN_AtCycD-like_rpt2 | 196 | 283 | - | - | |
Cre04g1465 | 364 | Gene3D | - | 65 | 282 | - | - | |
Cre04g1465 | 364 | SUPERFAMILY | Cyclin-like | 178 | 306 | IPR036915 | - | |
Cre04g1465 | 364 | SMART | cyclin_7 | 99 | 187 | IPR013763 | - | |
Cre04g1465 | 364 | SUPERFAMILY | Cyclin-like | 59 | 193 | IPR036915 | - | |
Cre04g1465 | 364 | Gene3D | - | 77 | 194 | - | - | |
Cre04g1465 | 364 | ProSitePatterns | Cyclins signature. | 94 | 125 | IPR048258 | - | |
Cre04g1465 | 364 | PANTHER | CYCLINS | 61 | 281 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0981 | Cre-Chr2:7216459 | Cre04g1465 | Cre-Chr4:33446872 | 3.10E-36 | dispersed | |
Cre04g1332 | Cre-Chr4:32140629 | Cre04g1465 | Cre-Chr4:33446872 | 2.40E-35 | dispersed | |
Cre04g1465 | Cre-Chr4:33446872 | Cre08g1559 | Cre-Chr8:28237832 | 1.20E-45 | dispersed | |
Cre01g0408 | Cre-Chr1:3444174 | Cre04g1465 | Cre-Chr4:33446872 | 1.60E-47 | transposed | |
Cre02g1449 | Cre-Chr2:26114397 | Cre04g1465 | Cre-Chr4:33446872 | 1.00E-32 | transposed | |
Cre04g0899 | Cre-Chr4:27659000 | Cre04g1465 | Cre-Chr4:33446872 | 2.60E-22 | transposed | |
Cre05g2240 | Cre-Chr5:34024661 | Cre04g1465 | Cre-Chr4:33446872 | 5.80E-32 | transposed | |
Cre10g1170 | Cre-Chr10:24034506 | Cre04g1465 | Cre-Chr4:33446872 | 1.90E-53 | transposed | |
Cre04g1465 | Cre-Chr4:33446872 | Cre08g1092 | Cre-Chr8:24046681 | 5.40E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1465 | K18810 | - | csv:101209378 | 567.0 |