Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1490 | ATGAATCCTCCCACTTTTCCCATGGAATTTTCCGGCGACCCACTTCCGACGACTATCATCGGAAGCGGCGACCCACGGATTCCGTTGCAAAACCTCTCCACCATCCGTTCTAGAATGGATGACGTCCAAATCTTCCTATCCGATAGCATCGACAGAGAAGTTCGTATCACCAATCCGCAGATGGATGCCGTTTCTTCTGAAATCGCCACCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCGCCGAAGCGAAAACCCCAACTGCGCCGGATTTGACGGCCTCGACGACTCGAACTCAGCCGAATCCTGTAACAGAGAAATCAATGGTGGAGCTGAAGGTCGAGGGCGTAGATGAGATTACGAGAACCGAATCTGAAGAATTTGACTCGGATTGGGAAATAGCGGAGCTGGATGCGATGGAATTGCTGGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGGGACGCGAATTTGCGGATGCATATGCGGGCCCATGGAAATCAATTCAAGACCCCAGAGGCGTTGGCCAAGCCGTTGGATGTTGTTGGTGCGGACCACAGGGAGAAGCGCACGCGATTCTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCGCTGAAATCGTTGATTTGCGTCAAGAACCACTTCAAGCGTAGTCACTGCCCTAAGATGTTCTCTTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCCCCGACGACGCTACTGCATCGGCGGCGACGTCGGAGATGGATGAAGATGGAGACAGTAATCAGATTTCGAAGGATGTTAATTTCCCAAACGCCTCCAATGGTTCGTCGGATGATGGATCTTTTGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAAGAGGTGCTGGGATTCCCCTACGATTTCGATTCGGAATCAGAGTGGAAATTTTGTGGTTTTTGA | 1122 | 51.07 | MNPPTFPMEFSGDPLPTTIIGSGDPRIPLQNLSTIRSRMDDVQIFLSDSIDREVRITNPQMDAVSSEIATAIQQIIVNGAALLACAEAKTPTAPDLTASTTRTQPNPVTEKSMVELKVEGVDEITRTESEEFDSDWEIAELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHREKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDATASAATSEMDEDGDSNQISKDVNFPNASNGSSDDGSFESFLDGFGSIENHCLQEVLGFPYDFDSESEWKFCGF | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 33651945 | 33653066 | - | CrPI670011_04g014900.1 | Cre04g1490 | 495794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1490 | 373 | FunFam | Zinc finger 45-like | 149 | 175 | - | - | |
Cre04g1490 | 373 | MobiDBLite | consensus disorder prediction | 300 | 333 | - | - | |
Cre04g1490 | 373 | Pfam | Zinc finger, C2H2 type | 152 | 174 | IPR013087 | - | |
Cre04g1490 | 373 | SMART | c2h2final6 | 202 | 235 | IPR013087 | - | |
Cre04g1490 | 373 | SMART | c2h2final6 | 240 | 262 | IPR013087 | - | |
Cre04g1490 | 373 | SMART | c2h2final6 | 152 | 174 | IPR013087 | - | |
Cre04g1490 | 373 | SMART | c2h2final6 | 268 | 292 | IPR013087 | - | |
Cre04g1490 | 373 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 154 | 174 | IPR013087 | - | |
Cre04g1490 | 373 | Gene3D | Classic Zinc Finger | 230 | 297 | - | - | |
Cre04g1490 | 373 | SUPERFAMILY | beta-beta-alpha zinc fingers | 149 | 175 | IPR036236 | - | |
Cre04g1490 | 373 | Gene3D | Classic Zinc Finger | 152 | 175 | - | - | |
Cre04g1490 | 373 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 22 | 314 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
Cre04g1490 | 373 | MobiDBLite | consensus disorder prediction | 308 | 333 | - | - | |
Cre04g1490 | 373 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 152 | 179 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1490 | Cre-Chr4:33651945 | Cre09g0990 | Cre-Chr9:10177712 | 1.30E-63 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53493 | PF00096 | zf-C2H2 | 0.00015 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1490 | - | - | - | 0.0 |