Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1510 ATGGAATGGAAAGCGCGTTTGAGTTGGCGGATTCCACGTAGGGACGGAGCGCGTGGGGGTCGGGCCCACTCAGCATTTGGTGATGTGTTTTGTTTTGGCATTCGCTTCGTCTTTACGCAAACAATTGAGACAAAGGCCGACGCTCCATATCCCTCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCCTCTTCTTCTTCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAAATGAACAAATGGGTTTTGAGCAATCCGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATTCCAGTCCCAATATCATAACTTCCTTGCCCCTAAATCCATCCCCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTCTACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTTCAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCATCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1197 46.45 MEWKARLSWRIPRRDGARGGRAHSAFGDVFCFGIRFVFTQTIETKADAPYPSAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSSSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGNEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSSFQSQYHNFLAPKSIPMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLQAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33815584 33818762 - CrPI670011_04g015100.1 Cre04g1510 495814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1510 398 Gene3D AP2/ERF domain 206 264 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 68 391 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre04g1510 398 Pfam AP2 domain 206 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 PRINTS Ethylene responsive element binding protein signature 229 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 MobiDBLite consensus disorder prediction 87 111 - -
Cre04g1510 398 MobiDBLite consensus disorder prediction 329 357 - -
Cre04g1510 398 SUPERFAMILY DNA-binding domain 206 264 IPR016177 GO:0003677(InterPro)
Cre04g1510 398 ProSiteProfiles AP2/ERF domain profile. 206 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 SMART rav1_2 206 269 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 CDD AP2 205 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1510 398 FunFam Ethylene-responsive transcription factor 2 205 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1510 Cre-Chr4:33815584 Cre11g1954 Cre-Chr11:31358313 1.70E-61 dispersed
Cre04g1510 Cre-Chr4:33815584 Cre08g1165 Cre-Chr8:24893628 2.70E-16 wgd
Cre04g1510 Cre-Chr4:33815584 Cre08g1034 Cre-Chr8:23503288 1.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53496 PF00847 AP2 9.60E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1510 K09286 - csv:101211347 537.339