Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1526 ATGGCGGGTCAACCGTCTGATTCTTCCCCTCTTATTCCACCGGCGCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGAACGTCAAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCACACTGTACCACATGTAAGGCCCCTTACCATATGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTCCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTCATTGCTTCTCTGGGATATTTGACATATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTTGATAGCAAAATTAGTTTTTATTACATATGCGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTACCTGGCACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCGTTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCGAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 972 43.93 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHMRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFIDGCQHYWLRLTWGFDSKISFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33941121 33945615 - CrPI670011_04g015260.1 Cre04g1526 495830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1526 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 322 - -
Cre04g1526 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270(InterPro)
Cre04g1526 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Cre04g1526 323 SUPERFAMILY RING/U-box 31 87 - -
Cre04g1526 323 SMART ringv_2 34 83 IPR011016 GO:0008270(InterPro)
Cre04g1526 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270(InterPro)
Cre04g1526 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1526 Cre-Chr4:33941121 Cre06g1931 Cre-Chr6:26472479 7.40E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1526 - - - 0.0