Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1543 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCCTCTATTCCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAATCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 960 49.58 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34062921 34064434 + CrPI670011_04g015430.1 Cre04g1543 495847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1543 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 318 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cre04g1543 319 MobiDBLite consensus disorder prediction 1 25 - -
Cre04g1543 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Cre04g1543 319 MobiDBLite consensus disorder prediction 155 179 - -
Cre04g1543 319 MobiDBLite consensus disorder prediction 155 171 - -
Cre04g1543 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1543 K14503 - - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0981 Cre-Chr3:8672778 Cre04g1543 Cre-Chr4:34062921 5.80E-55 transposed
Cre07g1384 Cre-Chr7:28736847 Cre04g1543 Cre-Chr4:34062921 1.90E-50 transposed
Cre04g1543 Cre-Chr4:34062921 Cre08g1472 Cre-Chr8:27577388 5.20E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1472 . 1 306 BZR Transcription Factor Family AT1G75080 60.1 3.2e-85 312.4
Cre04g1543 . 28 319 BZR Transcription Factor Family AT1G75080 59.2 1.4e-80 297.0
Cre08g1472 . 1 306 BZR Transcription Factor Family AT1G19350 58.8 1.4e-83 307.0
Cre04g1543 . 28 317 BZR Transcription Factor Family AT1G19350 59.5 5.0e-78 288.5
Cre04g1543 . 6 319 BZR Transcription Factor Family AT3G50750 57.7 2.7e-77 285.8
Cre07g1384 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 1.0e-49 193.7
Cre03g0981 . 80 327 BZR Transcription Factor Family AT4G18890 51.4 4.8e-47 184.9
Cre07g1384 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 3.1e-117 418.7
Cre03g0981 . 1 327 BZR Transcription Factor Family AT1G78700 67.5 1.3e-102 370.2
Cre04g1543 . 28 200 BZR Transcription Factor Family AT4G36780 79.1 4.2e-64 241.9
Cre08g1472 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 1.9e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53497 PF05687 BES1_N 1.70E-64 No_clan Cre TF