Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1551 | ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCACTGCTTTCATTCCGTTCATTGGGGACGATGATTCTGATGATTTGGGTCCCGAGTTCGTATTCAAAATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATTATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTAGGTGAGGATCGGGGAGTTGTCTCCTTTTCTTATGTTTCTCGTTGTCAGAATGTGCTGGCGCACTGTCATTCGCAAAAAGCTTTGGAGGATCGGGAGTCTTCTATTCTTGTCTCTTCTTATCCTGAGTGCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGCTGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTTGTTTCTGGACTGAATTCAACTTTTTCTTACTTCAGTCTCCCAATCCAACTTTGGTCAATGGGGACTGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCCGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTTGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGACCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA | 2814 | 46.98 | MADHSDEQHSFRTIATAFIPFIGDDDSDDLGPEFVFKIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVLGEDRGVVSFSYVSRCQNVLAHCHSQKALEDRESSILVSSYPECLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLSFIFELNLILGMRNYLRRLVVSGLNSTFSYFSLPIQLWSMGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD | 937 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34121729 | 34133857 | + | CrPI670011_04g015510.1 | Cre04g1551 | 495855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1551 | 937 | Pfam | Protein tyrosine and serine/threonine kinase | 49 | 307 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | PRINTS | Tyrosine kinase catalytic domain signature | 125 | 138 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | PRINTS | Tyrosine kinase catalytic domain signature | 236 | 258 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | PRINTS | Tyrosine kinase catalytic domain signature | 278 | 300 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | PRINTS | Tyrosine kinase catalytic domain signature | 163 | 181 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 322 | 355 | - | - | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 693 | 741 | - | - | |
Cre04g1551 | 937 | SUPERFAMILY | Protein kinase-like (PK-like) | 42 | 319 | IPR011009 | - | |
Cre04g1551 | 937 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 169 | 181 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | Gene3D | - | 840 | 897 | - | - | |
Cre04g1551 | 937 | SMART | brlzneu | 837 | 901 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1551 | 937 | SUPERFAMILY | Leucine zipper domain | 840 | 896 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1551 | 937 | FunFam | BZIP transcription factor | 839 | 890 | - | - | |
Cre04g1551 | 937 | CDD | bZIP_plant_GBF1 | 842 | 892 | IPR045314 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 915 | 937 | - | - | |
Cre04g1551 | 937 | SMART | serkin_6 | 49 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 573 | 596 | - | - | |
Cre04g1551 | 937 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 129 | - | - | |
Cre04g1551 | 937 | ProSiteProfiles | Protein kinase domain profile. | 49 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 675 | 741 | - | - | |
Cre04g1551 | 937 | Pfam | bZIP transcription factor | 837 | 899 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1551 | 937 | Coils | Coil | 850 | 905 | - | - | |
Cre04g1551 | 937 | CDD | STKc_MAP3K-like | 55 | 307 | - | - | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 839 | 860 | - | - | |
Cre04g1551 | 937 | MobiDBLite | consensus disorder prediction | 759 | 790 | - | - | |
Cre04g1551 | 937 | Pfam | G-box binding protein MFMR | 571 | 664 | IPR012900 | - | |
Cre04g1551 | 937 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 586 | 925 | IPR044827 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro) | |
Cre04g1551 | 937 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 844 | 859 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre04g1551 | 937 | Gene3D | Transferase(Phosphotransferase) domain 1 | 130 | 352 | - | - | |
Cre04g1551 | 937 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 839 | 902 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1551 | Cre-Chr4:34121729 | Cre10g1526 | Cre-Chr10:29191485 | 1.80E-80 | dispersed | |
Cre04g1551 | Cre-Chr4:34121729 | Cre06g2601 | Cre-Chr6:33704064 | 2.60E-84 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53499 | PF07714 | PK_Tyr_Ser-Thr | 2.80E-53 | CL0016 | Cre | TF | |
64067 | PF07714 | PK_Tyr_Ser-Thr | 2.80E-53 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1551 | K09060 | - | csv:101217128 | 687.567 |