Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1551 ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCACTGCTTTCATTCCGTTCATTGGGGACGATGATTCTGATGATTTGGGTCCCGAGTTCGTATTCAAAATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATTATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTAGGTGAGGATCGGGGAGTTGTCTCCTTTTCTTATGTTTCTCGTTGTCAGAATGTGCTGGCGCACTGTCATTCGCAAAAAGCTTTGGAGGATCGGGAGTCTTCTATTCTTGTCTCTTCTTATCCTGAGTGCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGCTGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTTGTTTCTGGACTGAATTCAACTTTTTCTTACTTCAGTCTCCCAATCCAACTTTGGTCAATGGGGACTGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCCGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTTGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGACCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA 2814 46.98 MADHSDEQHSFRTIATAFIPFIGDDDSDDLGPEFVFKIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVLGEDRGVVSFSYVSRCQNVLAHCHSQKALEDRESSILVSSYPECLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLSFIFELNLILGMRNYLRRLVVSGLNSTFSYFSLPIQLWSMGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34121729 34133857 + CrPI670011_04g015510.1 Cre04g1551 495855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1551 937 Pfam Protein tyrosine and serine/threonine kinase 49 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 MobiDBLite consensus disorder prediction 322 355 - -
Cre04g1551 937 MobiDBLite consensus disorder prediction 693 741 - -
Cre04g1551 937 SUPERFAMILY Protein kinase-like (PK-like) 42 319 IPR011009 -
Cre04g1551 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 Gene3D - 840 897 - -
Cre04g1551 937 SMART brlzneu 837 901 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1551 937 SUPERFAMILY Leucine zipper domain 840 896 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1551 937 FunFam BZIP transcription factor 839 890 - -
Cre04g1551 937 CDD bZIP_plant_GBF1 842 892 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1551 937 MobiDBLite consensus disorder prediction 915 937 - -
Cre04g1551 937 SMART serkin_6 49 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 MobiDBLite consensus disorder prediction 573 596 - -
Cre04g1551 937 Gene3D Phosphorylase Kinase; domain 1 39 129 - -
Cre04g1551 937 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1551 937 MobiDBLite consensus disorder prediction 675 741 - -
Cre04g1551 937 Pfam bZIP transcription factor 837 899 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1551 937 Coils Coil 850 905 - -
Cre04g1551 937 CDD STKc_MAP3K-like 55 307 - -
Cre04g1551 937 MobiDBLite consensus disorder prediction 839 860 - -
Cre04g1551 937 MobiDBLite consensus disorder prediction 759 790 - -
Cre04g1551 937 Pfam G-box binding protein MFMR 571 664 IPR012900 -
Cre04g1551 937 PANTHER G-BOX-BINDING FACTOR 3-RELATED 586 925 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cre04g1551 937 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 844 859 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre04g1551 937 Gene3D Transferase(Phosphotransferase) domain 1 130 352 - -
Cre04g1551 937 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 839 902 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1551 Cre-Chr4:34121729 Cre10g1526 Cre-Chr10:29191485 1.80E-80 dispersed
Cre04g1551 Cre-Chr4:34121729 Cre06g2601 Cre-Chr6:33704064 2.60E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53499 PF07714 PK_Tyr_Ser-Thr 2.80E-53 CL0016 Cre TF
64067 PF07714 PK_Tyr_Ser-Thr 2.80E-53 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1551 K09060 - csv:101217128 687.567