Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1553 ATGCCAGCTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGCGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATCTGCGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCGGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGCGCTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGCGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCAACGCCTGCAATGTCTGCCACAGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCTCAGCAAGAAAGCTTGCCATGGAACCACCACCACCAGAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGTGTAGACGTCGGCATAACAACCCGATCATACGGTGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 50.52 MPADVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPTPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34142591 34144717 - CrPI670011_04g015530.1 Cre04g1553 495857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1553 511 MobiDBLite consensus disorder prediction 185 244 - -
Cre04g1553 511 MobiDBLite consensus disorder prediction 11 25 - -
Cre04g1553 511 MobiDBLite consensus disorder prediction 218 238 - -
Cre04g1553 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cre04g1553 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre04g1553 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cre04g1553 511 MobiDBLite consensus disorder prediction 1 39 - -
Cre04g1553 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cre04g1553 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cre04g1553 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cre04g1553 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Cre04g1553 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Cre04g1553 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cre04g1553 511 SMART c2h2final6 132 152 IPR013087 -
Cre04g1553 511 SMART c2h2final6 97 127 IPR013087 -
Cre04g1553 511 SMART c2h2final6 56 78 IPR013087 -
Cre04g1553 511 MobiDBLite consensus disorder prediction 264 289 - -
Cre04g1553 511 Gene3D Classic Zinc Finger 36 103 - -
Cre04g1553 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cre04g1553 511 MobiDBLite consensus disorder prediction 269 289 - -
Cre04g1553 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1553 Cre-Chr4:34142591 Cre09g0697 Cre-Chr9:6684159 1.20E-88 dispersed
Cre03g0539 Cre-Chr3:4045656 Cre04g1553 Cre-Chr4:34142591 2.50E-87 transposed
Cre04g1553 Cre-Chr4:34142591 Cre07g1271 Cre-Chr7:26724539 5.50E-129 wgd
Cre04g1553 Cre-Chr4:34142591 Cre08g1467 Cre-Chr8:27543014 2.10E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53500 PF00096 zf-C2H2 0.0052 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1553 K25869 - csv:101217597 696.812