Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1560 ATGTACTACAGTAATAGTAGATTTTTTCTTGAATTTTGGAGGTGTGAAGGTGTTGGGGTTTACGAAAGCTCCCTTGTTTGCGATACATTTACATTTACATCCCCACTAAATCCGCTCCTCTCCATTCACTCTTTCAAATTTGGACGGACACGATCTTCTGACCACCTTGCGTCATCTGACGGCGCCCTCGAGGCTACTCTTAACCTGGGTCTCTGGTCCCCACTTCCTCTTGTCAGTTTCCCCGCATTGAGCGGGAGCCACTCCACCTCCCCCTCCACGTGGACGCCCATCCTCCGGTCTCGTCAGATCCCCACTGGGCCCCACCTGCCACGTCCCCCTTCATTCAACTCTCTCTCACTATTTCCGAAGGCTCGTGGCCGGTTTTCTTCTGCATGCAATCGGACTCATCGACGATCTCGCCGCCGTGATCTGTTCACTACCGGCTCGTTCCATTTCTATTTTTGTTTTGGCCGGAAAATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGAACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACTAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTCACCATTCCCTGTTCTTCACCCTCTGCTCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGGTGGTCTCGTGGACGGGGATTCCCCCGGCGACTCCTTCGGTGGTGGTTAAGGACACACAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAATGGCGGTTCATCGAGTTCTACAGGGACTGAAACGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTTTTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCGTATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATACTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCAGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCATTTCTTCATGGCGTTGATAGCAACGGCTTCAAAGTCTCAGAAGCAAATATGATCAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTTTGCTCACATCACCTCTTCCCCCGCAGCTCCGCCGTATTTGCTCGCCTGAGCTCCGATCCCGTCAAGCGATTGGTTTTGCCACTGCACCTGAACAGAACCAAAAGGACATGGATGACTCTCAGAAGAAACCCAAGGAGACTGGAGATATAATGTCTGATTCCTTCGGCGAAGGGTACTCAACTCGAAGCGATGAAGAAGGATTTGGAGGAACTTATGGAGGGAATCAGTCCATCGATGACGAATCTGAGAATAAAAAATCGTTTCTCCACGGGAATCAACATGAAACTCCGGTGGCTGTGGCTGTTCACTTGTTTTTTCCGGTTACTGGTGTTCTTCTTTTCCGCCGAGATCCAAATTCAGGGTTCTCACCGGATGATCTAGGCCTTCTGCGATTGTATTACAAGTCTCAATGGCCGAACCGTCCCTATATTATTAGGGAGGCGGTTTCTGATCGATCTTTGTCATCCGACCTTTGCCATGACAGGGATTGCTCGCTCGATCGTTCTTGCCCAACCCATGCTCGTTTCAAGGTTCCGAAAGTTTGCGTTTTGTCATTACTACATTGTAAAACACATAGAAATAGAAATGCGGATGAAGAACCTGTTTTGGGCCGGGCCGTGGATTGTAAAGCTGGTTTGATCTTCGCCATTGCTGAGCTGTTGGATTTGCAGATCTCTGTTAAGTTCTGGAATTTCAAGTGGAATCATTCTATCTTGGTGTATATGCCGATGATGATTTTTTGA 2964 49.6 MYYSNSRFFLEFWRCEGVGVYESSLVCDTFTFTSPLNPLLSIHSFKFGRTRSSDHLASSDGALEATLNLGLWSPLPLVSFPALSGSHSTSPSTWTPILRSRQIPTGPHLPRPPSFNSLSLFPKARGRFSSACNRTHRRSRRRDLFTTGSFHFYFCFGRKMANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSAHNRIIFPDPPKSEPAVEPPVVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTETTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAFYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESFLHGVDSNGFKVSEANMINAIRFGRTPPPILLTSPLPPQLRRICSPELRSRQAIGFATAPEQNQKDMDDSQKKPKETGDIMSDSFGEGYSTRSDEEGFGGTYGGNQSIDDESENKKSFLHGNQHETPVAVAVHLFFPVTGVLLFRRDPNSGFSPDDLGLLRLYYKSQWPNRPYIIREAVSDRSLSSDLCHDRDCSLDRSCPTHARFKVPKVCVLSLLHCKTHRNRNADEEPVLGRAVDCKAGLIFAIAELLDLQISVKFWNFKWNHSILVYMPMMIF 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34204842 34217476 + CrPI670011_04g015600.1 Cre04g1560 495864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1560 987 MobiDBLite consensus disorder prediction 775 790 - -
Cre04g1560 987 Pfam GRAS domain family 397 711 IPR005202 -
Cre04g1560 987 MobiDBLite consensus disorder prediction 765 822 - -
Cre04g1560 987 ProSiteProfiles GRAS family profile. 387 765 IPR005202 -
Cre04g1560 987 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 391 710 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre04g1560 987 MobiDBLite consensus disorder prediction 87 116 - -
Cre04g1560 987 Coils Coil 170 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1560 Cre-Chr4:34204842 Cre09g0930 Cre-Chr9:9445925 2.50E-45 dispersed
Cre03g1154 Cre-Chr3:11782839 Cre04g1560 Cre-Chr4:34204842 2.30E-41 transposed
Cre03g1575 Cre-Chr3:31258027 Cre04g1560 Cre-Chr4:34204842 7.10E-30 transposed
Cre05g1656 Cre-Chr5:27522011 Cre04g1560 Cre-Chr4:34204842 1.50E-19 transposed
Cre07g1288 Cre-Chr7:27006836 Cre04g1560 Cre-Chr4:34204842 2.20E-161 transposed
Cre08g0509 Cre-Chr8:17564856 Cre04g1560 Cre-Chr4:34204842 3.10E-33 transposed
Cre10g0621 Cre-Chr10:5760946 Cre04g1560 Cre-Chr4:34204842 1.60E-40 transposed
Cre11g1204 Cre-Chr11:9983798 Cre04g1560 Cre-Chr4:34204842 1.20E-43 transposed
Cre04g1560 Cre-Chr4:34204842 Cre07g1266 Cre-Chr7:26588233 3.90E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g2227 . 74 740 GRAS Transcription Factor Family AT2G37650 54.3 3.1e-194 675.6
Cre03g0450 . 314 696 GRAS Transcription Factor Family AT3G46600 56.7 3.6e-126 449.1
Cre04g1365 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.4e-135 479.2
Cre10g0519 . 490 859 GRAS Transcription Factor Family AT3G60630 51.0 2.3e-92 337.0
Cre07g1453 . 21 443 GRAS Transcription Factor Family AT5G41920 64.8 3.6e-147 518.5
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT5G66770 57.4 1.2e-172 603.6
Cre04g1560 . 160 728 GRAS Transcription Factor Family AT5G66770 54.6 8.5e-150 527.7
Cre10g0686 . 45 544 GRAS Transcription Factor Family AT1G50600 58.5 8.7e-162 567.4
Cre02g1271 . 57 532 GRAS Transcription Factor Family AT1G50600 58.0 5.3e-151 531.6
Cre04g1759 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.5e-142 503.4
Cre10g0621 . 1 634 GRAS Transcription Factor Family AT1G63100 50.7 6.8e-164 574.7
Cre09g1895 . 44 581 GRAS Transcription Factor Family AT1G14920 67.7 1.3e-205 713.0
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT1G14920 62.0 4.8e-184 641.3
Cre05g1321 . 32 555 GRAS Transcription Factor Family AT1G14920 56.5 1.3e-157 553.5
Cre10g0600 . 34 400 GRAS Transcription Factor Family AT1G55580 51.6 2.0e-103 373.2
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre02g2309 . 251 771 GRAS Transcription Factor Family AT1G07520 50.7 7.7e-142 501.1
Cre02g1271 . 19 532 GRAS Transcription Factor Family AT5G48150 63.3 9.6e-179 623.6
Cre10g0686 . 17 544 GRAS Transcription Factor Family AT5G48150 59.2 1.4e-174 609.8
Cre04g1759 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.7e-151 533.1
Cre09g1895 . 46 578 GRAS Transcription Factor Family AT2G01570 68.6 1.7e-211 732.6
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT2G01570 63.1 1.2e-188 656.8
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT2G01570 58.4 8.8e-163 570.9
Cre03g1154 . 47 593 GRAS Transcription Factor Family AT1G66350 60.5 4.2e-177 618.2
Cre09g1895 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.1e-172 603.6
Cre05g1321 . 1 554 GRAS Transcription Factor Family AT1G66350 56.0 8.5e-162 567.4
Cre03g1154 . 48 594 GRAS Transcription Factor Family AT3G03450 62.6 2.4e-178 622.5
Cre09g1895 . 10 578 GRAS Transcription Factor Family AT3G03450 58.2 2.8e-171 599.0
Cre05g1321 . 31 555 GRAS Transcription Factor Family AT3G03450 58.5 2.2e-160 562.8
Cre03g1154 . 47 596 GRAS Transcription Factor Family AT5G17490 56.4 2.6e-158 555.8
Cre09g1895 . 42 578 GRAS Transcription Factor Family AT5G17490 57.3 2.7e-155 545.8
Cre05g1321 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 4.6e-139 491.9
Cre09g0930 . 1 570 GRAS Transcription Factor Family AT1G21450 57.6 1.3e-174 610.1
Cre10g0686 . 168 544 GRAS Transcription Factor Family AT1G21450 52.9 1.8e-115 413.7
Cre03g0450 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 5.6e-128 455.3
Cre10g2227 . 369 740 GRAS Transcription Factor Family AT5G59450 54.1 2.1e-114 410.2
Cre04g1759 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.7e-176 615.1
Cre10g0686 . 60 544 GRAS Transcription Factor Family AT4G17230 52.2 3.1e-135 479.2
Cre02g1271 . 134 532 GRAS Transcription Factor Family AT2G04890 64.4 2.1e-147 519.2
Cre10g0686 . 166 544 GRAS Transcription Factor Family AT2G04890 62.5 1.6e-142 503.1
Cre04g1759 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 3.0e-125 445.7
Cre03g1575 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 6.1e-178 620.9
Cre05g2260 . 49 469 GRAS Transcription Factor Family AT1G50420 60.2 4.7e-138 488.4
Cre06g1069 . 472 837 GRAS Transcription Factor Family AT4G00150 60.2 5.5e-122 435.3
Cre10g0519 . 496 859 GRAS Transcription Factor Family AT4G00150 55.4 3.0e-104 376.3
Cre07g1288 . 1 608 GRAS Transcription Factor Family AT3G50650 52.1 1.5e-148 523.5
Cre07g1453 . 73 441 GRAS Transcription Factor Family AT3G54220 64.0 8.6e-135 478.0
Cre04g1376 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 1.0e-157 553.9
Cre02g1577 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 4.7e-123 438.7
Cre06g0871 . 64 455 GRAS Transcription Factor Family AT4G37650 50.7 1.2e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53501 PF03514 GRAS 7.70E-94 CL0063 Cre TF