Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1560 ATGTACTACAGTAATAGTAGATTTTTTCTTGAATTTTGGAGGTGTGAAGGTGTTGGGGTTTACGAAAGCTCCCTTGTTTGCGATACATTTACATTTACATCCCCACTAAATCCGCTCCTCTCCATTCACTCTTTCAAATTTGGACGGACACGATCTTCTGACCACCTTGCGTCATCTGACGGCGCCCTCGAGGCTACTCTTAACCTGGGTCTCTGGTCCCCACTTCCTCTTGTCAGTTTCCCCGCATTGAGCGGGAGCCACTCCACCTCCCCCTCCACGTGGACGCCCATCCTCCGGTCTCGTCAGATCCCCACTGGGCCCCACCTGCCACGTCCCCCTTCATTCAACTCTCTCTCACTATTTCCGAAGGCTCGTGGCCGGTTTTCTTCTGCATGCAATCGGACTCATCGACGATCTCGCCGCCGTGATCTGTTCACTACCGGCTCGTTCCATTTCTATTTTTGTTTTGGCCGGAAAATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGAACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACTAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTCACCATTCCCTGTTCTTCACCCTCTGCTCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGGTGGTCTCGTGGACGGGGATTCCCCCGGCGACTCCTTCGGTGGTGGTTAAGGACACACAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAATGGCGGTTCATCGAGTTCTACAGGGACTGAAACGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTTTTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCGTATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATACTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCAGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCATTTCTTCATGGCGTTGATAGCAACGGCTTCAAAGTCTCAGAAGCAAATATGATCAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTTTGCTCACATCACCTCTTCCCCCGCAGCTCCGCCGTATTTGCTCGCCTGAGCTCCGATCCCGTCAAGCGATTGGTTTTGCCACTGCACCTGAACAGAACCAAAAGGACATGGATGACTCTCAGAAGAAACCCAAGGAGACTGGAGATATAATGTCTGATTCCTTCGGCGAAGGGTACTCAACTCGAAGCGATGAAGAAGGATTTGGAGGAACTTATGGAGGGAATCAGTCCATCGATGACGAATCTGAGAATAAAAAATCGTTTCTCCACGGGAATCAACATGAAACTCCGGTGGCTGTGGCTGTTCACTTGTTTTTTCCGGTTACTGGTGTTCTTCTTTTCCGCCGAGATCCAAATTCAGGGTTCTCACCGGATGATCTAGGCCTTCTGCGATTGTATTACAAGTCTCAATGGCCGAACCGTCCCTATATTATTAGGGAGGCGGTTTCTGATCGATCTTTGTCATCCGACCTTTGCCATGACAGGGATTGCTCGCTCGATCGTTCTTGCCCAACCCATGCTCGTTTCAAGGTTCCGAAAGTTTGCGTTTTGTCATTACTACATTGTAAAACACATAGAAATAGAAATGCGGATGAAGAACCTGTTTTGGGCCGGGCCGTGGATTGTAAAGCTGGTTTGATCTTCGCCATTGCTGAGCTGTTGGATTTGCAGATCTCTGTTAAGTTCTGGAATTTCAAGTGGAATCATTCTATCTTGGTGTATATGCCGATGATGATTTTTTGA 2964 49.6 MYYSNSRFFLEFWRCEGVGVYESSLVCDTFTFTSPLNPLLSIHSFKFGRTRSSDHLASSDGALEATLNLGLWSPLPLVSFPALSGSHSTSPSTWTPILRSRQIPTGPHLPRPPSFNSLSLFPKARGRFSSACNRTHRRSRRRDLFTTGSFHFYFCFGRKMANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSAHNRIIFPDPPKSEPAVEPPVVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTETTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAFYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESFLHGVDSNGFKVSEANMINAIRFGRTPPPILLTSPLPPQLRRICSPELRSRQAIGFATAPEQNQKDMDDSQKKPKETGDIMSDSFGEGYSTRSDEEGFGGTYGGNQSIDDESENKKSFLHGNQHETPVAVAVHLFFPVTGVLLFRRDPNSGFSPDDLGLLRLYYKSQWPNRPYIIREAVSDRSLSSDLCHDRDCSLDRSCPTHARFKVPKVCVLSLLHCKTHRNRNADEEPVLGRAVDCKAGLIFAIAELLDLQISVKFWNFKWNHSILVYMPMMIF 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34204842 34217476 + CrPI670011_04g015600.1 Cre04g1560 495864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1560 987 MobiDBLite consensus disorder prediction 775 790 - -
Cre04g1560 987 Pfam GRAS domain family 397 711 IPR005202 -
Cre04g1560 987 MobiDBLite consensus disorder prediction 765 822 - -
Cre04g1560 987 ProSiteProfiles GRAS family profile. 387 765 IPR005202 -
Cre04g1560 987 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 391 710 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre04g1560 987 MobiDBLite consensus disorder prediction 87 116 - -
Cre04g1560 987 Coils Coil 170 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1560 Cre-Chr4:34204842 Cre09g0930 Cre-Chr9:9445925 2.50E-45 dispersed
Cre03g1154 Cre-Chr3:11782839 Cre04g1560 Cre-Chr4:34204842 2.30E-41 transposed
Cre03g1575 Cre-Chr3:31258027 Cre04g1560 Cre-Chr4:34204842 7.10E-30 transposed
Cre05g1656 Cre-Chr5:27522011 Cre04g1560 Cre-Chr4:34204842 1.50E-19 transposed
Cre07g1288 Cre-Chr7:27006836 Cre04g1560 Cre-Chr4:34204842 2.20E-161 transposed
Cre08g0509 Cre-Chr8:17564856 Cre04g1560 Cre-Chr4:34204842 3.10E-33 transposed
Cre10g0621 Cre-Chr10:5760946 Cre04g1560 Cre-Chr4:34204842 1.60E-40 transposed
Cre11g1204 Cre-Chr11:9983798 Cre04g1560 Cre-Chr4:34204842 1.20E-43 transposed
Cre04g1560 Cre-Chr4:34204842 Cre07g1266 Cre-Chr7:26588233 3.90E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53501 PF03514 GRAS 7.70E-94 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1560 - - - 0.0