Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1561 ATGTTATTCAATTCTACAAGGAAGTTTATATCATTTGTGTCTTGGAAGAATATTGGGATGTCATACTCCAATAGAGAACTCATTATTATTTGGATTAGTGGAAGATATTTTTCAATTCTAAAAGAGAATATTGACACCAAAGGAAGAATGCGGGAAACTATGGTAGCATTTCAGCAAGAAGGGAAGAACTTCCTCAGGTTGAATTTGCTGGGAACCCATAACAATGGAGAAACCAATGATTCTTCACCGCAGGATGTGAAGATCAATGAACTAAGAGCTGCCTTAGGACACATATCCGGTCGTAGTTTAAAGTACTGTAATGATGCGTGCCTTCGGAGATATTTGGTTGCTCGGAATTGGGATCTTCACAAGGCAAAGAAAATGGTTGAGGACTCACTCCAATGGAGGGCAACTTATAAGCCTGAGGAAATCAGATGGCACGAAGTAGCACATGAAGGTGAAACGGGCAAATGTTTTAGAGCAAATTTCTACGACCGTTTTGGTCGAACAGTGCTCATATCCAGGCCAGGGATGCAGAATACAAACTCGCCGGAAGACAACGTTCGACATGTAGTGTATCTTTTAGAGAACACCATTTTGAACCTTCGTAATGGCCAAGAACAGATATCGTGGCTGATAGATTTTACTGGATTTACACTAAACACCAACATCTCTGTCAAAGCAGCAAGAGGCATTATTAACATACTGCAGAGCCACTATCCAGAAAGGCTTGCTATTTCGTTTCTCTACAATCCTCCAAGAATCTTTCAAGCCTTTTGGAAGGCTATCAGGTACTTTCTTGACCCGAAGACGGCTCAGAAAGTAAACTTTATATACCCCAACAACGAGGACAGTGTAGAGCTAATGAAATCTTTCTTCGATATGGAAAATCTTCCTAGTGTATTTGGAGGAAAAGCCACTCTAACATATGACCATGAGGAGTTCTCAAAAATGATGGCAATAGACGATATGAAAACTGCCAAATTTTGGGAGTTAAACAACAAGCCTTGCCATAATACGAATGGGCATTCAGGCCTAGAGGTTGCACCAGAAGAGGCAATGCCCATCTCAGTTTCATCAACTTAG 1086 40.79 MLFNSTRKFISFVSWKNIGMSYSNRELIIIWISGRYFSILKENIDTKGRMRETMVAFQQEGKNFLRLNLLGTHNNGETNDSSPQDVKINELRAALGHISGRSLKYCNDACLRRYLVARNWDLHKAKKMVEDSLQWRATYKPEEIRWHEVAHEGETGKCFRANFYDRFGRTVLISRPGMQNTNSPEDNVRHVVYLLENTILNLRNGQEQISWLIDFTGFTLNTNISVKAARGIINILQSHYPERLAISFLYNPPRIFQAFWKAIRYFLDPKTAQKVNFIYPNNEDSVELMKSFFDMENLPSVFGGKATLTYDHEEFSKMMAIDDMKTAKFWELNNKPCHNTNGHSGLEVAPEEAMPISVSST 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34219556 34229724 + CrPI670011_04g015610.1 Cre04g1561 495865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1561 361 SUPERFAMILY CRAL/TRIO N-terminal domain 77 148 IPR036273 -
Cre04g1561 361 SMART sec14_4 152 307 IPR001251 -
Cre04g1561 361 Pfam CRAL/TRIO, N-terminal domain 106 131 IPR011074 -
Cre04g1561 361 Gene3D - 54 349 IPR036865 -
Cre04g1561 361 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Cre04g1561 361 SUPERFAMILY CRAL/TRIO domain 146 320 IPR036865 -
Cre04g1561 361 CDD SEC14 154 305 IPR001251 -
Cre04g1561 361 PANTHER GH16843P 74 337 IPR052578 GO:0008526(PANTHER)
Cre04g1561 361 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 164 310 IPR001251 -
Cre04g1561 361 Pfam CRAL/TRIO domain 155 304 IPR001251 -
Cre04g1561 361 FunFam Phosphatidylinositol transfer protein 3 68 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1561 K26544 - - csv:101219012 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1561 Cre-Chr4:34219556 Cre11g1951 Cre-Chr11:31301400 7.30E-67 dispersed
Cre05g0634 Cre-Chr5:5600773 Cre04g1561 Cre-Chr4:34219556 8.30E-14 transposed
Cre07g1290 Cre-Chr7:27077399 Cre04g1561 Cre-Chr4:34219556 6.40E-115 transposed
Cre04g1561 Cre-Chr4:34219556 Cre05g2079 Cre-Chr5:32709282 1.10E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82