Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1570 | ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCGGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAATTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA | 1008 | 47.52 | METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34289540 | 34290547 | + | CrPI670011_04g015700.1 | Cre04g1570 | 495874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1570 | 335 | MobiDBLite | consensus disorder prediction | 65 | 97 | - | - | |
Cre04g1570 | 335 | FunFam | Zinc-finger homeodomain protein 2 | 261 | 332 | - | - | |
Cre04g1570 | 335 | Pfam | ZF-HD protein dimerisation region | 128 | 180 | IPR006456 | - | |
Cre04g1570 | 335 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 129 | 180 | IPR006456 | - | |
Cre04g1570 | 335 | MobiDBLite | consensus disorder prediction | 14 | 41 | - | - | |
Cre04g1570 | 335 | SUPERFAMILY | Homeodomain-like | 267 | 332 | IPR009057 | - | |
Cre04g1570 | 335 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 130 | 179 | IPR006456 | - | |
Cre04g1570 | 335 | MobiDBLite | consensus disorder prediction | 80 | 97 | - | - | |
Cre04g1570 | 335 | Gene3D | - | 260 | 332 | - | - | |
Cre04g1570 | 335 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 95 | 329 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cre04g1570 | 335 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cre04g1570 | 335 | NCBIfam | homeobox domain, ZF-HD class | 271 | 328 | IPR006455 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1570 | Cre-Chr4:34289540 | Cre08g1088 | Cre-Chr8:23971898 | 3.40E-42 | dispersed | |
Cre07g1212 | Cre-Chr7:25402115 | Cre04g1570 | Cre-Chr4:34289540 | 8.20E-45 | transposed | |
Cre04g1570 | Cre-Chr4:34289540 | Cre08g1446 | Cre-Chr8:27390283 | 8.50E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53503 | PF04770 | ZF-HD_dimer | 9.90E-31 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1570 | - | - | - | 0.0 |