Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1570 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCGGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAATTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAGATGTAA 1008 47.52 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34289540 34290547 + CrPI670011_04g015700.1 Cre04g1570 495874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1570 335 MobiDBLite consensus disorder prediction 65 97 - -
Cre04g1570 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Cre04g1570 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Cre04g1570 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Cre04g1570 335 MobiDBLite consensus disorder prediction 14 41 - -
Cre04g1570 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Cre04g1570 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Cre04g1570 335 MobiDBLite consensus disorder prediction 80 97 - -
Cre04g1570 335 Gene3D - 260 332 - -
Cre04g1570 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre04g1570 335 MobiDBLite consensus disorder prediction 1 41 - -
Cre04g1570 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1570 Cre-Chr4:34289540 Cre08g1088 Cre-Chr8:23971898 3.40E-42 dispersed
Cre07g1212 Cre-Chr7:25402115 Cre04g1570 Cre-Chr4:34289540 8.20E-45 transposed
Cre04g1570 Cre-Chr4:34289540 Cre08g1446 Cre-Chr8:27390283 8.50E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53503 PF04770 ZF-HD_dimer 9.90E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1570 - - - 0.0