Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1574 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCGGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGTTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTTGTGGCCGATGTTGATCCAGCCCTCGATGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.65 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPVSKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34300866 34302863 - CrPI670011_04g015740.1 Cre04g1574 495878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1574 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cre04g1574 413 PANTHER TUBBY-RELATED 46 412 - -
Cre04g1574 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cre04g1574 413 MobiDBLite consensus disorder prediction 22 46 - -
Cre04g1574 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cre04g1574 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cre04g1574 413 Gene3D - 48 101 - -
Cre04g1574 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cre04g1574 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cre04g1574 413 Pfam Tub family 116 408 IPR000007 -
Cre04g1574 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1574 K19600 - - csv:101221704 787.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1574 Cre-Chr4:34300866 Cre05g1169 Cre-Chr5:11269851 7.90E-118 dispersed
Cre04g1574 Cre-Chr4:34300866 Cre05g2058 Cre-Chr5:32570904 3.40E-145 wgd
Cre04g1574 Cre-Chr4:34300866 Cre07g1208 Cre-Chr7:25326144 1.60E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0325 . 1 431 TUB Transcription Factor Family AT1G76900 73.0 8.9e-179 623.6
Cre08g0649 . 1 432 TUB Transcription Factor Family AT1G76900 69.6 8.3e-169 590.5
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.1e-168 590.1
Cre05g0707 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.6e-111 400.2
Cre05g1169 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.8e-102 367.1
Cre08g0325 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 5.2e-94 341.3
Cre08g0649 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 2.6e-93 339.0
Cre05g0707 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 5.2e-70 261.5
Cre05g2058 . 295 522 TUB Transcription Factor Family AT1G25280 53.8 1.6e-66 250.0
Cre04g1574 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 7.3e-64 241.1
Cre06g1299 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.6e-53 206.1
Cre05g0707 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 2.1e-96 349.4
Cre06g1299 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.5e-86 316.6
Cre08g0325 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 4.1e-84 308.5
Cre08g0649 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.6e-83 306.6
Cre05g1169 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 3.9e-82 302.0
Cre05g2058 . 231 522 TUB Transcription Factor Family AT5G18680 51.9 3.7e-77 285.4
Cre07g1395 . 117 383 TUB Transcription Factor Family AT5G18680 51.0 2.1e-67 253.1
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.3e-138 490.0
Cre05g2058 . 117 522 TUB Transcription Factor Family AT2G18280 59.0 4.9e-125 444.9
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 1.5e-118 423.3
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 3.2e-116 415.6
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 4.2e-116 415.2
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G18280 50.9 9.6e-113 404.1
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 7.1e-100 361.3
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G18280 52.3 1.2e-94 344.0
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 5.7e-161 564.3
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.3e-146 515.8
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.5e-132 469.9
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 1.4e-130 463.4
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 4.0e-130 461.8
Cre05g2058 . 126 522 TUB Transcription Factor Family AT2G47900 55.4 5.1e-117 418.3
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.0e-114 408.7
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G47900 51.8 3.6e-99 359.0
Cre09g0327 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 5.5e-73 271.6
Cre08g0325 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cre05g1169 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 4.6e-146 514.6
Cre08g0649 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 2.0e-141 499.2
Cre05g0707 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.4e-105 380.2
Cre05g2058 . 184 522 TUB Transcription Factor Family AT1G43640 50.1 2.5e-99 359.4
Cre06g1299 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.7e-93 339.3
Cre05g2058 . 150 522 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cre04g1574 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 2.5e-121 432.6
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 5.0e-114 408.3
Cre08g0325 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.7e-112 402.5
Cre08g0649 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.7e-112 402.5
Cre05g0707 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.7e-104 375.9
Cre07g1395 . 1 383 TUB Transcription Factor Family AT1G53320 70.0 1.1e-153 540.0
Cre05g0707 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.1e-97 351.7
Cre06g1299 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.9e-82 301.6
Cre05g1169 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 1.9e-81 299.7
Cre08g0649 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 5.4e-81 298.1
Cre08g0325 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.6e-80 295.0
Cre05g2058 . 235 522 TUB Transcription Factor Family AT3G06380 52.9 3.9e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53504 PF01167 Tub 1.40E-101 CL0395 Cre TF