Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1574 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCGGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGTTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTTGTGGCCGATGTTGATCCAGCCCTCGATGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.65 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPVSKGKEPDIDFSSTSITVAPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34300866 34302863 - CrPI670011_04g015740.1 Cre04g1574 495878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1574 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Cre04g1574 413 PANTHER TUBBY-RELATED 46 412 - -
Cre04g1574 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cre04g1574 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cre04g1574 413 MobiDBLite consensus disorder prediction 22 46 - -
Cre04g1574 413 Pfam F-box domain 55 97 IPR001810 GO:0005515(InterPro)
Cre04g1574 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cre04g1574 413 Gene3D - 48 101 - -
Cre04g1574 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Cre04g1574 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cre04g1574 413 Pfam Tub family 116 408 IPR000007 -
Cre04g1574 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1574 Cre-Chr4:34300866 Cre05g1169 Cre-Chr5:11269851 7.90E-118 dispersed
Cre04g1574 Cre-Chr4:34300866 Cre05g2058 Cre-Chr5:32570904 3.40E-145 wgd
Cre04g1574 Cre-Chr4:34300866 Cre07g1208 Cre-Chr7:25326144 1.60E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53504 PF01167 Tub 1.40E-101 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1574 K19600 - csv:101221704 787.719