Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1576 ATGGAAAGGCCAACAACAACAAGCGAAAATTCGAAACCGTCTGATCAAACGAGTGAGAGAGAAGAGTTAAAGTTTTTGAGGAAAAACGAGAGAAGAGATCGGCGGAGAAGAACTCCGATCCACCAAACAAATACAGAAGAAGAACAGCTTTTTAAGAGCGCGGCGGAGGACTTGACCGCGTTTCGGAATCCAACGAGGAGCTCCGGCAACGGCGACGGTGGCCATTTGGACGGCGGTGATTTACCTCCAACGCAGCTTTCCGGGGAAAAAATTCCTCTCGGACTCCGGCGAAACGTTCAGAAACTGGCTTTCGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCGCCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCACTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGACTCGAAAGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATCAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCAATGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCCGTCGACGTTATATCTCCCGCCTGCACGTCTAATAACAGACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTGAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGACGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCCAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTGCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGGTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 2586 46.71 MERPTTTSENSKPSDQTSEREELKFLRKNERRDRRRRTPIHQTNTEEEQLFKSAAEDLTAFRNPTRSSGNGDGGHLDGGDLPPTQLSGEKIPLGLRRNVQKLAFVLAGKFGEALPNLLKVVAGSAAMEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISLSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSKGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVNGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDVISPACTSNNRLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGDGFDIESGGQELNPTEEQNLSLFFQQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34311166 34318835 - CrPI670011_04g015760.1 Cre04g1576 495880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1576 861 SMART SynN_4 599 726 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 FunFam Syntaxin 132 760 860 - -
Cre04g1576 861 SUPERFAMILY t-snare proteins 603 822 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre04g1576 861 Gene3D - 762 860 - -
Cre04g1576 861 CDD SynN 607 754 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 Coils Coil 611 631 - -
Cre04g1576 861 PANTHER UNCHARACTERIZED 227 506 IPR008547 -
Cre04g1576 861 Pfam Syntaxin 607 802 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 773 829 IPR000727 -
Cre04g1576 861 Pfam Eukaryotic protein of unknown function (DUF829) 269 506 IPR008547 -
Cre04g1576 861 Coils Coil 700 720 - -
Cre04g1576 861 MobiDBLite consensus disorder prediction 14 29 - -
Cre04g1576 861 CDD SNARE_syntaxin1-like 773 826 - -
Cre04g1576 861 SMART tSNARE_6 762 829 IPR000727 -
Cre04g1576 861 MobiDBLite consensus disorder prediction 1 89 - -
Cre04g1576 861 Gene3D - 599 730 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1576 K08486 - - csv:101222646 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1143 Cre-Chr4:30039475 Cre04g1576 Cre-Chr4:34311166 4.20E-44 dispersed
Cre04g1576 Cre-Chr4:34311166 Cre09g1725 Cre-Chr9:35519689 4.90E-61 dispersed
Cre04g1576 Cre-Chr4:34311166 Cre10g1939 Cre-Chr10:34055389 1.40E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g992 . . . Bda10g00138 . . . Bma15g00995 . . Cma03g00739 . Car03g00675 . . . Cpe10g00621 Bhi03g01316 . . . Hepe04g1524 . . Cla01g01917 Cam01g2004 Cec04g1661 Cco04g1722 Clacu01g2023 Cmu01g1899 Cre04g1576 . . Cone6ag1634 . Lsi01g00668 . . Cme08g00856 . Blo06g00135 . . . . . . . Cmo03g00768 . . . . . . . . . . . . . . . . . . . . . . Csa06g03249 Chy02g00639 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1226 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 6.3e-87 318.2
Cre04g0696 . 1 309 SNARE and Associated Proteins AT1G08560 69.0 7.3e-100 360.9
Cre04g1576 . 557 859 SNARE and Associated Proteins AT2G18260 55.5 2.4e-87 319.3
Cre10g1939 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.7e-115 411.8
Cre04g1143 . 26 282 SNARE and Associated Proteins AT3G11820 73.2 2.5e-103 372.5
Cre03g0844 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 2.0e-92 336.3
Cre10g1499 . 30 284 SNARE and Associated Proteins AT3G11820 52.9 4.0e-69 258.8
Cre10g1939 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 6.2e-92 334.7
Cre04g1143 . 33 282 SNARE and Associated Proteins AT3G52400 65.2 6.6e-86 314.7
Cre03g0844 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 6.4e-81 298.1
Cre03g0844 . 1 299 SNARE and Associated Proteins AT4G03330 68.9 1.2e-107 386.7
Cre10g1939 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 3.2e-84 308.9
Cre04g1143 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 2.4e-79 292.7
Cre10g1499 . 1 284 SNARE and Associated Proteins AT4G03330 52.4 1.3e-69 260.4
Cre03g0844 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.8e-127 452.6
Cre10g1939 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.7e-91 332.4
Cre04g1143 . 1 297 SNARE and Associated Proteins AT1G61290 56.9 4.5e-86 315.1
Cre03g0844 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 3.1e-124 441.8
Cre10g1939 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.7e-93 339.7
Cre04g1143 . 1 292 SNARE and Associated Proteins AT1G11250 57.5 3.1e-87 318.9
Cre10g1499 . 1 303 SNARE and Associated Proteins AT3G03800 74.3 1.0e-114 410.2
Cre02g1184 . 1 304 SNARE and Associated Proteins AT3G03800 54.8 6.1e-83 304.7
Cre10g1499 . 1 202 SNARE and Associated Proteins AT5G08080 79.3 3.2e-81 298.5
Cre02g1184 . 1 204 SNARE and Associated Proteins AT5G08080 59.3 8.8e-55 210.7
Cre10g0399 . 1 261 SNARE and Associated Proteins AT5G16830 59.6 2.7e-77 285.8
Cre10g0399 . 1 261 SNARE and Associated Proteins AT5G46860 66.7 3.5e-82 302.0
Cre10g0399 . 1 257 SNARE and Associated Proteins AT4G17730 60.7 1.7e-73 273.1
Cre10g0399 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 4.8e-52 202.2
Cre07g0761 . 84 419 SNARE and Associated Proteins AT5G05760 65.9 1.2e-111 400.2
Cre08g1226 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 6.3e-87 318.2
Cre02g1836 . 1 327 SNARE and Associated Proteins AT5G26980 76.8 5.0e-128 454.5
Cre09g0524 . 1 317 SNARE and Associated Proteins AT5G26980 66.2 6.9e-101 364.4
Cre02g1836 . 1 329 SNARE and Associated Proteins AT4G02195 64.4 3.5e-105 378.6
Cre09g0524 . 1 317 SNARE and Associated Proteins AT4G02195 66.8 3.9e-104 375.2
Cre02g1836 . 1 328 SNARE and Associated Proteins AT3G05710 76.3 4.2e-130 461.5
Cre09g0524 . 1 317 SNARE and Associated Proteins AT3G05710 63.7 2.8e-97 352.4
Cre09g1057 . 92 324 SNARE and Associated Proteins AT1G16240 72.1 2.6e-89 325.5
Cre10g0700 . 979 1200 SNARE and Associated Proteins AT1G16240 68.9 9.7e-81 297.0
Cre09g1057 . 91 324 SNARE and Associated Proteins AT1G79590 71.4 4.2e-88 321.6
Cre10g0700 . 974 1200 SNARE and Associated Proteins AT1G79590 67.4 4.5e-82 301.6
Cre06g0825 . 176 366 SNARE and Associated Proteins AT1G28490 71.7 9.0e-67 250.4
Cre10g2153 . 51 314 SNARE and Associated Proteins AT3G09740 79.7 2.9e-113 405.2
Cre02g2412 . 1 265 SNARE and Associated Proteins AT3G09740 67.8 1.6e-95 346.3
Cre02g2412 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 8.3e-92 334.0
Cre10g2153 . 51 314 SNARE and Associated Proteins AT3G45280 64.4 9.4e-88 320.5
Cre10g2153 . 51 311 SNARE and Associated Proteins AT3G61450 68.2 7.8e-95 344.0
Cre02g2412 . 1 262 SNARE and Associated Proteins AT3G61450 61.4 3.3e-85 312.0
Cre11g1122 . 65 309 SNARE and Associated Proteins AT1G51740 72.5 2.4e-90 328.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002433 5 3 5 4 2 1 2 1 2 2 1 1 2 1 2 1 1 3 2 1 2 3 2 2 1 1 1 2 1 4 61