Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1576 ATGGAAAGGCCAACAACAACAAGCGAAAATTCGAAACCGTCTGATCAAACGAGTGAGAGAGAAGAGTTAAAGTTTTTGAGGAAAAACGAGAGAAGAGATCGGCGGAGAAGAACTCCGATCCACCAAACAAATACAGAAGAAGAACAGCTTTTTAAGAGCGCGGCGGAGGACTTGACCGCGTTTCGGAATCCAACGAGGAGCTCCGGCAACGGCGACGGTGGCCATTTGGACGGCGGTGATTTACCTCCAACGCAGCTTTCCGGGGAAAAAATTCCTCTCGGACTCCGGCGAAACGTTCAGAAACTGGCTTTCGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCGCCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCACTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGACTCGAAAGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATCAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCAATGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCAGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCCGTCGACGTTATATCTCCCGCCTGCACGTCTAATAACAGACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTGAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGACGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCCAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTGCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACGAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGAGGTTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCGAGACCGAGTTAGGGGACCGAGTCAGGCACGAGTCAGTGATGGATATACAGAGGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 2586 46.71 MERPTTTSENSKPSDQTSEREELKFLRKNERRDRRRRTPIHQTNTEEEQLFKSAAEDLTAFRNPTRSSGNGDGGHLDGGDLPPTQLSGEKIPLGLRRNVQKLAFVLAGKFGEALPNLLKVVAGSAAMEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISLSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSKGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVNGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDVISPACTSNNRLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGDGFDIESGGQELNPTEEQNLSLFFQQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34311166 34318835 - CrPI670011_04g015760.1 Cre04g1576 495880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1576 861 SMART SynN_4 599 726 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 FunFam Syntaxin 132 760 860 - -
Cre04g1576 861 SUPERFAMILY t-snare proteins 603 822 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre04g1576 861 Gene3D - 762 860 - -
Cre04g1576 861 CDD SynN 607 754 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 Coils Coil 611 631 - -
Cre04g1576 861 PANTHER UNCHARACTERIZED 227 506 IPR008547 -
Cre04g1576 861 Pfam Syntaxin 607 802 IPR006011 GO:0016020(InterPro)
Cre04g1576 861 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 773 829 IPR000727 -
Cre04g1576 861 Pfam Eukaryotic protein of unknown function (DUF829) 269 506 IPR008547 -
Cre04g1576 861 Coils Coil 700 720 - -
Cre04g1576 861 MobiDBLite consensus disorder prediction 14 29 - -
Cre04g1576 861 CDD SNARE_syntaxin1-like 773 826 - -
Cre04g1576 861 SMART tSNARE_6 762 829 IPR000727 -
Cre04g1576 861 MobiDBLite consensus disorder prediction 1 89 - -
Cre04g1576 861 Gene3D - 599 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1143 Cre-Chr4:30039475 Cre04g1576 Cre-Chr4:34311166 4.20E-44 dispersed
Cre04g1576 Cre-Chr4:34311166 Cre09g1725 Cre-Chr9:35519689 4.90E-61 dispersed
Cre04g1576 Cre-Chr4:34311166 Cre10g1939 Cre-Chr10:34055389 1.40E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1576 K08486 - csv:101222646 630.172