Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1577 ATGGCCGCCATTATTTCTGTGCATAATGCTTTGATCGAGCTCCAACTCTACCATATTTCCCATTCTGCAGCCGCAGCCACCATGGCCAAGGAGGATAAAGACAATATCTGGAGAGATCGGCAAAGACAAAGACTAATTGCTACCTTTCTCAAAAACCAGCTTAGAGATTTCAGGAAAACAACACTAGATTCGGTATCTGTATGTGATCGTTCACCAGTTTCCTCATTTTGTTTTATTCGGTTCCAGGAATTATTGTCATCGTCGCCATCGATGAATCATCCTCGTGTTCATCGATTTCTTGGAATTGATCATCCATACAATTTGGTTTCGGAATCGGTCATCGCAACTCGAAAGAGCCGAATGTGTCCAGCTTTGAACTTAATGAAGCAGAGGAAGGATGGTTATGAACCGTCTGATACTGAGACAGAATGGCAAGAAAGCCCTTGGAATGACCCTAAGGAGAAGAAACTTGTACTGGATTATAATAATCGAAGAGCTGATTCGGCAGTATCCAAGAAGTTCAATGCTGTGGCGAATGTTTCTCCTCCTAGTTTGAGAAGAAACGGTGGCAAAACGCCTCATAGGTCAGCCAAAGACGACAGTGTTCTTGTTATGCTTCAGAGAAACATCAGCCCCTTGTCAAGAGCAGAAAGAAGAAGACACGAGTCTCCTTTTAAAGCTGGGGGGGAGGAAATTGGAAGCTCTAGCGTGAGGTCAAGAAAAGAGGAGAAGTTGACTTCTTCTCATGGGAGTAACAGAATAAGTCAAAAACCAGGCTACAGTAGGAGATCAGTGACTGCTCCAAGGTTGAGGATGAGAGATGAACATATGATTGCGGTAAATGATTTGTCTCAGAGGAGAGAGAGAGCAGCTCCAACCTTGAAGGTCAGCTCCATCCTGCAACAGCCAAAGGAGGTTTCCCAGGTGAATTCTCTATCTATTGGTGAAATGAATGAGATGATTGCAGATGGAAGGATTAATAGAGGTTTGGCTTTTAATGACCCGGTGGTTGAAAGCACGGGGTCGATCTCGCCAGGGGATATTTTCTTTTCGCGTGATGGCTTGCCTATTGGGATGAATAACAATGTCACAGCAAAGAGAAATGCGTTCAAAAACTATATAAGTCCAAAGCCTACATTTGTGTCTAAAAAGAATGATGATACTTATAATCAAGTGGAAGTAAATGCTAATGGTAGAGGGGTTTCTTCTGCTGGAGCAGGTTTGTCAACGACCACTACCAGTAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCATTGAAAATAGTAAGATCAGCGATGTGAGTGGAAGAACAAGTGAAAGTACTAGAAGGTTTGTAGCCAATAGACGAAAGAAGAGGAATGATATATGGTTTTCTTGTATGAGGAATGGGACTTGCAGGACAACAAAATCGCCTGAAAAGCGACCATTTGATGAAGCTTTATATATTGAAAAGGCAAATGTTGTTGAATACTTGAAACCCTTCTGGGCGGATCAGCATCGGCCAGTTTCCTTAAATGGGTTCACTTTCCATAAGCATGAGGCCCAACTTCTCAAGCAATTAGTTTCACAGGACAGTTTTCCCCACATTCTCTTCAAAGGTCCAAGTGGATCTGGCAAAAGAGTGCTGATGATGGCTCTTCTGCGTGAGATATATGGTGATTCATGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAACTGACGCAAGTCTTCGTTCCATTGACATCAAGTGCTCACCATGTGGAGCTAAATCTAAGCTCCGAAGCAAATGCTAAGTATGCTTTGCTGGGATTGGCTAAAGAAATAGGAAGTGAATATTCCATTAATATGGAAGCAAGAAATGTCAATCCGAAGGCAAACTTCAAAGTGGTAGTCCTTTTAGATGTAGACAAAGCCGCAGAGGATATTCAGCACTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGAAGACGACACAGGCATCCTTGAATCGGTGATAAGCCGCTGCAAAGTTATTAAAATTAACCCTCCTGTAACTCATGAAATCATGGATGTCCTTATCCAAATAGCAGAGAAGGAGGAATTCGACTTACCCATGAACTTTGCTTCTAAGATAGCTACTAAAGCAAAGCAAAACCTGAGAAGAGCAATCATGGCGCTTGAAGCATGCAAGGCACACAACTATCCATTTTCTGATGACCAGCCAATCCCTATTGGATGGGAAGATGCCGTGGTAGAACTTGCAGCCCATATCCTCGAAGACCCATCGAATCCAAAATTATACCAAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCAGTTCATCCTAAACTAATTCTCCAGAAGCTTGTAGAACAATTTCTGAAAAGAATTGAGCTGAGATCAAGGAGGGAACTTTATTATTGGCATGCTTACTATAACAAGAGACTCCCAACTGAAACTGGAACAGGTGCTTTACCCAAATTGGAAGAATTTGTGGCAAAGTTCATGAGCATGTACAGGAAGAGCTCCACCAACTACTCAGAGAGTGATCAATCCTTCAAGGTGAATATGGAAAACAGTGCTGGAGGAGGAAATTCTGCAAATATCGGATTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCATGTCTCGAAGATCTGTCGCCGCTCACCCTTGGCACGATTTGGAGATTGGACCTGGTGCACCGTCAGTTTTCAATTGTGTTGTTGAAATTGGCAAAGGCAGCAAGGTTAAATACGAGCTTGACAAGGCCAGTGGCCTTATCAAAGTCGACCGCGTACTTTACTCATCAGTTGTTTACCCACACAATTATGGTTTCATCCCACGTACAATTTGTGAAGACAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCACTATACGGACATCAAGGAGATTCCCCCACACCGGCTAGCCGAAATTCGCCGATTCTTCGAGGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCGGAGGCTGCCACTGATGCCATCAAGTACTCCATGGATTTGTATGCTGCCTACATAGTTGAAAGCTTGAGGCAGTAA 3228 42.94 MAAIISVHNALIELQLYHISHSAAAATMAKEDKDNIWRDRQRQRLIATFLKNQLRDFRKTTLDSVSVCDRSPVSSFCFIRFQELLSSSPSMNHPRVHRFLGIDHPYNLVSESVIATRKSRMCPALNLMKQRKDGYEPSDTETEWQESPWNDPKEKKLVLDYNNRRADSAVSKKFNAVANVSPPSLRRNGGKTPHRSAKDDSVLVMLQRNISPLSRAERRRHESPFKAGGEEIGSSSVRSRKEEKLTSSHGSNRISQKPGYSRRSVTAPRLRMRDEHMIAVNDLSQRRERAAPTLKVSSILQQPKEVSQVNSLSIGEMNEMIADGRINRGLAFNDPVVESTGSISPGDIFFSRDGLPIGMNNNVTAKRNAFKNYISPKPTFVSKKNDDTYNQVEVNANGRGVSSAGAGLSTTTTSSAAVSRENSSRISIENSKISDVSGRTSESTRRFVANRRKKRNDIWFSCMRNGTCRTTKSPEKRPFDEALYIEKANVVEYLKPFWADQHRPVSLNGFTFHKHEAQLLKQLVSQDSFPHILFKGPSGSGKRVLMMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINMEARNVNPKANFKVVVLLDVDKAAEDIQHLLRWIMDGYKDACKVVLCCEDDTGILESVISRCKVIKINPPVTHEIMDVLIQIAEKEEFDLPMNFASKIATKAKQNLRRAIMALEACKAHNYPFSDDQPIPIGWEDAVVELAAHILEDPSNPKLYQVKEKIQKLLVDSVHPKLILQKLVEQFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKFMSMYRKSSTNYSESDQSFKVNMENSAGGGNSANIGFPRIRLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAATDAIKYSMDLYAAYIVESLRQ 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34324729 34332995 + CrPI670011_04g015770.1 Cre04g1577 495881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1577 1075 MobiDBLite consensus disorder prediction 177 265 - -
Cre04g1577 1075 ProSitePatterns Inorganic pyrophosphatase signature. 961 967 - -
Cre04g1577 1075 Gene3D Inorganic pyrophosphatase 893 1071 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cre04g1577 1075 Pfam Replication factor C subunit 3, C-terminal domain 750 841 - -
Cre04g1577 1075 MobiDBLite consensus disorder prediction 213 227 - -
Cre04g1577 1075 CDD pyrophosphatase 911 1063 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cre04g1577 1075 SUPERFAMILY post-AAA+ oligomerization domain-like 749 844 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cre04g1577 1075 Pfam RCF1/5-like, AAA+ ATPase lid domain 694 734 - -
Cre04g1577 1075 MobiDBLite consensus disorder prediction 400 424 - -
Cre04g1577 1075 FunFam replication factor C subunit 3 688 746 - -
Cre04g1577 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 733 IPR027417 -
Cre04g1577 1075 SUPERFAMILY Inorganic pyrophosphatase 891 1070 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cre04g1577 1075 Gene3D - 496 687 IPR027417 -
Cre04g1577 1075 Pfam Inorganic pyrophosphatase 914 1065 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cre04g1577 1075 Gene3D - 689 746 - -
Cre04g1577 1075 Gene3D - 749 844 - -
Cre04g1577 1075 FunFam Soluble inorganic pyrophosphatase 4 893 1071 - -
Cre04g1577 1075 Hamap Inorganic pyrophosphatase [ppa]. 910 1066 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Cre04g1577 1075 PANTHER INORGANIC PYROPHOSPHATASE 877 1074 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0004427(PANTHER)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006796(InterPro)|GO:0006796(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1577 K10756 - - csv:101218071 1357.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0578 Cre-Chr4:22483752 Cre04g1577 Cre-Chr4:34324729 1.10E-64 dispersed
Cre04g1577 Cre-Chr4:34324729 Cre06g0999 Cre-Chr6:3541422 3.40E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38