Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1578 ATGACAACTTTTGTGCCTGAGCTTAATGGCGGTGGTCCTTTTGTAGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTTCGTGCTTCCTCGATTCCGATTCTTGATCTTCCTGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATTCGGAAGTTTTTGGCGGGTTTGATGATCTGGATTTTGCGATTTCTTATGACGAACTGGTTGGTCCATCCAAGGCCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCGTCCTGGATTCTCATATCTGGTTGATGAAGCAAACCCCTCGCCGAAGGCAACAGATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAACACAATGCCACCCCTAGTGGACAGTAATGACTCTGGACCGTTATTCGAGGATAACCTTATTTCTCAAAATGGATGTGGTAGAGATGTTTGTCATTCTCACGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCGCCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGGACTACTCTAAAAGGACTTTGAATTGTGGGGAAGCTGCTTCTGAAATAATTTCGGACGACCATTCTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCGATGAAAGAAGCAATGGATAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGGGAGGAAGAAGGAAGGGGTCCATGGACGGATGAGACTGGATTCAAAAAATGATATGAGAGAAAAGGAAGGAAATTTGACTAAGATTCCAAATCGATTTAAGAGTTGGGCCAATGAAAGTGCGCAGGGTATTGGGGAAATTCATGGCAATGAAATGAATTTGCCTGCTAGAGAGGAGAGGCACAAGGATGTGAGGGCAATTGAAGTTTGTTCAACACACTATGGAGAAGAGGAACTTTTAACAGCTGCTGAAAAGACTGTACCAATTAGAAGTGGGAGTAGATTTCTTGTGTCCGAGAACTATGATTGTTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGAAAAGGAATTTGAGTCGCTGAGTAATGATGCAATTTCCAACTTTGTGACTGGACAAATGGAAATAGAGACCAATGCATGGGAGAACGATAAAGATCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGCATTTGGGGAATCTGGTCCAGGGAAAGGAGGAAGATAAGATAAAACGAAAGCCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGAAAATTTGAAGTTGCTCAAGAGTTTATGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAACGTGAGAAGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCACCAAGGGATGTTGAACAAGAAAAGAAAAAGGTTGAAAGAAAGGAAAATGGAAATATTCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAACAAAATGGAAGCCACTGAGAATGAGAAAAGAGAGATGCCCACAGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAGGGTGTTCCCTGAGCAACCAGATGATAAGAAAAGACTGAATTTGGTTCTTGAGGATGACAACTTTAAGGGACAGATGGATCATGAAAGACAACTGGAAGGAGTTCATGGGATGGAAGATCATGGGGAAAGGGGAAAGGAGGCTGCCAAAGTTGGAGTAAGTGACACACCTGAATTAGCTCATGAGAGAGAAGATGGCAACAAATGGCCACAAGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATGATCCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGTATGATGAATTAGAGACATTGGAGGACAGACACAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAGTGATTTGGGGACATCTGCTGCTGCATGTCAAATGAACAATGACAAAGACCATTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGATGAAAGTGTAGAGAGGAAGACCATAGTTACAGTTAATGAAAATCTTCAATTTAACAAAAATCCTTGTGTGCCGAGTGTATGCCAGGCAGAGGTAGAACACCGTAAACTTCCAGTTGAAATGGAAGATGCAGATATTCAACTTTCTTTTGATGAATTGACTAAAAGAGCAGCCAAAGAAACAGGCTTTCAGCCCGGACCTGGACATACACAATCAGAACCAACTAATTCGGAAGATGCACTTTCATCTGAAAACTCAACAAGCATGGATGCGGGAGAGAACGTAGTTAAGATTGAAGATATGAAAACATCGCTTCCTCTGGATAGAAGCAATGAGAAAGCAGGACAGGCTGATGAATGCATGGAAGAGTTTGTAGGGAGAAAGAAGTCTGTTACCAGAATGGGTTCTGATCCTGAACATCCAGGAAGCAACTTGTTCTGTCGTATGGAAGATAAAGTGAAGCCCTCTGACCAGGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAAAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACGCAAAAGAGTGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCAGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAATTTGAGAACGACATTATTCGAAAATTGGAAGAAGAGAGGGAGAGGGAAAGAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTACCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCGGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCCACTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTACAATCTCTGAGCTTTGGCTCTGCTGCAGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGCACCTGATAGTGGTTGGCAGCCAATTCCCTTAACAGAAGTTATTACCGCCGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAATATATATGCGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGAGATGTCCTCACAGGTACGAGCGCCTCGGGGAGGATCCTACCGTTAGCTTGTTGGAAGGAAGGCTGAAGAGGGCAACCAGTTTGCCAACTCGAGTACTCGGTTCTGGCTCGAGGAAACTGACATCTGAGATTATATTTCCCGAGTTTGCTCAACGGAAACAGAAGCAGTCGAAGAAAGCTAACAAAGGAGGACACCCTCTTTTCAGTTTCTTTGATTTTCGCCGCAAGAGGAAGTCAACAGCCAGGCCTGAATTTGCAAGGTATCTTGAGTATTTGAAGGAAGGAGGACTGTGGGATTTGAAAGCAAATGCTCCTGTAATCTACTTTAAATGA 4587 43.49 MTTFVPELNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYSEVFGGFDDLDFAISYDELVGPSKAVDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMRPGFSYLVDEANPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSGPLFEDNLISQNGCGRDVCHSHEDFITVSEISLRTEPSQVPPPSRPPPKFATKKGDYSKRTLNCGEAASEIISDDHSLPLFDVEVDASSSAAASAAAMKEAMDKAQAQLQNAKDLWGRKKEGVHGRMRLDSKNDMREKEGNLTKIPNRFKSWANESAQGIGEIHGNEMNLPAREERHKDVRAIEVCSTHYGEEELLTAAEKTVPIRSGSRFLVSENYDCCSEWKDATEFFELARADISEKEFESLSNDAISNFVTGQMEIETNAWENDKDQDKKAKPFHTAHVLNEEVKHLGNLVQGKEEDKIKRKPNKNETRQKEQVKLKIHQGVCDLEANDRKFEVAQEFMEVKKQMFYASEPEKREKPIEFRQLDSELKVEQPVSPRDVEQEKKKVERKENGNILKESHRKENNANKMEATENEKREMPTEASEREKLEQKMRVFPEQPDDKKRLNLVLEDDNFKGQMDHERQLEGVHGMEDHGERGKEAAKVGVSDTPELAHEREDGNKWPQDFQYREVCEKGVDDPFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEYDELETLEDRHKVNSTIGSQVYVEVSDLGTSAAACQMNNDKDHLPMGLACPTGMSEEFSVVDESVERKTIVTVNENLQFNKNPCVPSVCQAEVEHRKLPVEMEDADIQLSFDELTKRAAKETGFQPGPGHTQSEPTNSEDALSSENSTSMDAGENVVKIEDMKTSLPLDRSNEKAGQADECMEEFVGRKKSVTRMGSDPEHPGSNLFCRMEDKVKPSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKSGEFSREVNANQAPERKEKIVNQSHTSKGKESERVRSEAEFENDIIRKLEEEREREREREKDRMPIDRISLEPRDRVGTEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKAATMEARVKAERATVERATAEARERAAEKAMSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSLSFGSAAASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILAPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEERRCPHRYERLGEDPTVSLLEGRLKRATSLPTRVLGSGSRKLTSEIIFPEFAQRKQKQSKKANKGGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 1528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34341169 34349474 + CrPI670011_04g015780.1 Cre04g1578 495882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1578 1528 MobiDBLite consensus disorder prediction 534 555 - -
Cre04g1578 1528 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 16 1418 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1103 1140 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 273 295 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 116 132 - -
Cre04g1578 1528 FunFam Auxilin-related protein 1 1289 1418 - -
Cre04g1578 1528 Coils Coil 1084 1111 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1188 1251 - -
Cre04g1578 1528 SUPERFAMILY Chaperone J-domain 1275 1419 IPR036869 -
Cre04g1578 1528 Coils Coil 1283 1318 - -
Cre04g1578 1528 ProSiteProfiles dnaJ domain profile. 1354 1428 IPR001623 -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1035 1089 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1188 1225 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1040 1060 - -
Cre04g1578 1528 Coils Coil 1177 1206 - -
Cre04g1578 1528 CDD DnaJ 1366 1411 IPR001623 -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1062 1089 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 918 950 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1271 1290 - -
Cre04g1578 1528 Coils Coil 1144 1171 - -
Cre04g1578 1528 Coils Coil 333 353 - -
Cre04g1578 1528 Gene3D DnaJ domain 1291 1418 IPR036869 -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 923 950 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 1226 1251 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 186 237 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 106 132 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 611 686 - -
Cre04g1578 1528 MobiDBLite consensus disorder prediction 197 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1578 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1578 Cre-Chr4:34341169 Cre04g2089 Cre-Chr4:38104903 1.60E-27 dispersed
Cre04g0301 Cre-Chr4:8373813 Cre04g1578 Cre-Chr4:34341169 6.40E-57 transposed
Cre08g0552 Cre-Chr8:18243842 Cre04g1578 Cre-Chr4:34341169 1.40E-48 transposed
Cre04g1578 Cre-Chr4:34341169 Cre05g2055 Cre-Chr5:32535505 1.40E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1001 . Blo16g00054 . . . Bpe13g00436 . . . . . Cma07g00476 Car03g00672 Car07g00419 Sed14g1133 . . Bhi03g01325 Tan03g2000 Cmetu08g1336 . Hepe04g1527 . . Cla01g01921 Cam01g2007 Cec04g1666 Cco04g1727 Clacu01g2028 Cmu01g1903 Cre04g1578 . . . . . . . Cme08g00861 . . . . . . . . . Cmo03g00766 Cmo07g00476 . . . . . . . . . . . . . . . . . . . . . . Chy02g00632 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41