Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1586 ATGGAGAAATCAAAGAGAAGCAGAGAGATGGAGGTTTTCAAAATACTCCATATGAATTCAGGAGATGGAGACAAAAGCTACGCCAAAAACTCCTTACTTCAGCAAAAGGCAATATCTATGGCGTGGCCAATCATAAAGGAAGCCATTGAAGACTTCTGCAATGAAAACATTCCAACCACTTTAACCATGGCAGATTTGGGCTGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAATAAACCACTCCAATTTCAAATCTTCTTCAATGATCTCCCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGCCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAAACTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAAGTTTGCATTTTGTTCATTCTTCTTATACTCTCCATTGGCTCTCTCAGGTACCTGAAGGGATGGAGATAATAAACAAAGGGAACATATTCATAGACAGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGTCGAATGGTTCTTACCATATTAGGAAGAACAGATGAATATCCAACAAACAAAGATTTTTGTTACGCTTTTGCACTTCTCAATTTAGCTTTCAAGAACATGGTTGCAGAGGGGATTCTAAAAGAGGAGAAAGTTGATAGATTCAATATTCCAAATTTCATGCCAAGTCCAGAGGAAGTAAAAGCAGAGGTTTTAAAAGAAGGAAGTTTCATACTAAATGAACTTGGAGTCTCAAGAATTGATTGGAACTTCTACAATACTGAATTTGATGGATCAAATGTGTTAGTTGATAGCAGTTCCAATATTGCAAAATGCATTAGATCTGTTACTGAACCACTTTTGATTCCTCACTTTGGAGAACCCATTGTTGAAGATTTATTTTACAGCACCCCAGGTCATTCCGTTAGTGTTGCTGTTAATTAG 1068 36.8 MEKSKRSREMEVFKILHMNSGDGDKSYAKNSLLQQKAISMAWPIIKEAIEDFCNENIPTTLTMADLGCSSGPNTLMIVSKLIKQFHKNLHNKPLQFQIFFNDLPANDFNAIFRSLPNFLEDLKNQIGTDFGNCFFNGVPGSFYGRLFPNKSLHFVHSSYTLHWLSQVPEGMEIINKGNIFIDSTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMVLTILGRTDEYPTNKDFCYAFALLNLAFKNMVAEGILKEEKVDRFNIPNFMPSPEEVKAEVLKEGSFILNELGVSRIDWNFYNTEFDGSNVLVDSSSNIAKCIRSVTEPLLIPHFGEPIVEDLFYSTPGHSVSVAVN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34378716 34382560 - CrPI670011_04g015860.1 Cre04g1586 495890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1586 355 Gene3D - 15 344 IPR042086 -
Cre04g1586 355 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 15 345 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cre04g1586 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 344 IPR029063 -
Cre04g1586 355 Gene3D Vaccinia Virus protein VP39 30 296 IPR029063 -
Cre04g1586 355 Pfam SAM dependent carboxyl methyltransferase 48 343 IPR005299 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1586 K21483 - - csv:101209890 526.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1586 Cre-Chr4:34378716 Cre06g1642 Cre-Chr6:12651882 5.20E-102 dispersed
Cre04g1585 Cre-Chr4:34377062 Cre04g1586 Cre-Chr4:34378716 1.50E-21 tandem
Cre04g1586 Cre-Chr4:34378716 Cre04g1587 Cre-Chr4:34389907 1.30E-196 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1010 . . . . . . Bma09g00086 . . . . . . . . Cpe19g00820 . . . . . . . . Cla01g01928 . . Cco04g1735 . . Cre04g1586 . . . . . . . . Blo05g00804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03261 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218