Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1605 ATGGCCAAGCTTGTGAGCTTTGTTTTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTCTGTGGCAGAAATAATGGTGGCTTTGGGTCTCTGTACCCTCAATATTATGACCATTCATGCCCCAAAGCTAAGGAAATAGTGAAATCCATTGTGGCAAAGGCTTTTGCCAGAGAAGCTCGAATTGCTGCTTCCATCCTTAGACTTCATTTCCATGATTGTTTTGTTCAGGGGTGTGATGCATCTCTACTGTTGGATAGCAGTGGAAGCATTAGGAGCGAAAAGAATTCAAACCCAAATAGGAACTCAGCTAGAGGATTTGAAGTGATTGATGAAATCAAATCTGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGATATCTTGGCTTTGGCTGCAAGAGATTCGACTGTCATTACGGGTGGACCATCTTGGGAGGTTCCATTGGGAAGGAAGGACTCAAGAACTGCGAGTTTGAGTGGCTCCAACAACAACATTCCAGCTCCAAACAACACTTTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATTGTTGATCTTGTTGCCTTATCTGGAAGTCACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAAAGGCTATACAACCAAAACGGCAACGGACAACCTGACAAAACCCTTCCGCAGTCGTTCGCGGCGGGGCTCCGCAACCGCTGCCCCAGATCCGGCGGTGACAATAACCTCTTTTTCCTCGATTACGTCAGCCCGACCAAATTCGACAACAGCTACTTCAAGAACTTAGTTGGTTTCAAAGGGCTTCTGAACTCCGACCAAGTTCTCCTCACCGAAAACGATGCGTCGGCCGCTTTGGTAAAGAAATATGCCGACAACAGCGAGCTGTTCTTCGAGCAATTCGCCAAATCTATGATCAAAATGGGTAATATTTCCCCATTGACGGGCTCAAATGGAGAAATTAGAAAGACTTGCAGGAAGATCAACAGTTAA 1002 45.71 MAKLVSFVFVLSLLAFAPLCFCGRNNGGFGSLYPQYYDHSCPKAKEIVKSIVAKAFAREARIAASILRLHFHDCFVQGCDASLLLDSSGSIRSEKNSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVITGGPSWEVPLGRKDSRTASLSGSNNNIPAPNNTFQTILNRFQNQGLDIVDLVALSGSHTIGNSRCTSFRQRLYNQNGNGQPDKTLPQSFAAGLRNRCPRSGGDNNLFFLDYVSPTKFDNSYFKNLVGFKGLLNSDQVLLTENDASAALVKKYADNSELFFEQFAKSMIKMGNISPLTGSNGEIRKTCRKINS 333
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 34520778 34523166 + CrPI670011_04g016050.1 Cre04g1605 495909
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1605 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Cre04g1605 333 Gene3D Peroxidase, domain 2 169 312 - -
Cre04g1605 333 FunFam Peroxidase 169 311 - -
Cre04g1605 333 Pfam Peroxidase 48 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Haem peroxidase superfamily signature 251 266 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PANTHER PEROXIDASE 72-RELATED 9 331 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 249 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 265 282 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Cre04g1605 333 CDD secretory_peroxidase 32 331 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre04g1605 333 Gene3D - 36 332 - -
Cre04g1605 333 ProSiteProfiles Plant heme peroxidase family profile. 31 332 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 SUPERFAMILY Heme-dependent peroxidases 32 332 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1605 333 FunFam Peroxidase 35 177 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1605 Cre-Chr4:34520778 Cre11g1063 Cre-Chr11:8063455 1.30E-89 dispersed
Cre10g2155 Cre-Chr10:36096963 Cre04g1605 Cre-Chr4:34520778 5.10E-56 dispersed
Cre04g1605 Cre-Chr4:34520778 Cre07g1238 Cre-Chr7:25883449 3.50E-148 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1605 K00430 - csv:101204648 605.134