Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1607 ATGTGGCAGTGGGAGAATGCCACCGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCCGCCATGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCAAATCTCCCGACTTACAAGAATACGGCTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTTGGGTCATCTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAAGAAAGATATTCTGACAATGGAAAGAAGGACCTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCTTTGGTTTGTTTTTGCACGAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTCTAAAGGGACCAGAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGGAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCCGCGGCTTCAATCACATTTATTGTTTGTCGGCGTTCACTTGGAGCTCGTCAGTTATCCATGGTATTGGTGGCAGCAGGAGCTAAGATGGATTCTTTGTGTTTACTAGCAGCCATTTGTTCAACACCATCACAAACAAGTCCAGAGGAGTTATTGTTTTGGGTTCTCTGGTGTTGGTTTTGGTTGAAGAAGAAGCATATTGGAAACAAAGATGGGATTCCTAAAGGGAATTTGGGTTGGCCTTTCTTTGGTGAAACTCTTCAATTCATTTCGTCTGGCTATTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGAATGTGTTTAAAACCAACATTTTGGGGACACCCATTATAGTATCAACTGATTCAGAGGTGAATAAGGTTGTTTTACAAAACCATGGGAATATATTTATCCCAGCTTACCCAAAATCAATAACAGAATTACTTGGTACATTTTCAATTCTAAGAATGAATGGAAATGTTCAAAAAAGAGTTCATACAATAATTGGAGCCTTCCTAAGATCCCCTCAACTCAAAGCCCAAATCACACAAGATATTCAAAACACTGTTAAACTTCGACTTGCCAATTGGAATTCCTCTCAATTGGTTTATCTCCAAACTGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCTGGCGAAGAATTGAAGATTTTGAAAAGGGAATTTGAAGAGTTTATCAAAGCTTTGATTTGTATACCCATTAAATTACCCGGAACTAGGCTATATAAATCTTTGAAGGCCAGAGAGAAGCTGTTGAAAATTGTGAGTAAGATTGTGGAAGATCGAAAGTCGAGGGTGGAGGAGAAGGTTGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACGATGAGATTCAAGGGCTACCGTTGGATTTCATCAGCAGTCACATCATAGAGTTGATGATTCCCGGCGAGGAGACGGTGCCGATGGCCATGACCCTCGCCGTCAAGTTTCTCAGTGATTGCCCCCGCGCTCTTGCCCAATTAATGGAAGAGAATATGAAACTGAAGAAGCAGAAGGATGGCTCTGGGGAGGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATCAGTGAAACATTAAGAATGGCCAATATCATCAATGGGGTTTGGAGAAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGTGTCTTGGCGTCTTTTATTTCAGTTCATATGGACGAGAAGAACTACGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGAAAATTTGTCTGCAACAAACAACCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCTGGCATCGAACTCGCCAGGCTCGAAATCTCAATTTTCCTTCATCATCTCGTCACTACCTACAACTTCAAGTACCATTTGCTGAACAGGCGTATCAGAGATGGCATTAGGAACCCAGTTCCTGTGTCATTTGATGAAAGATGGCTTTCCTTAAATGCTGAACCCCATTTCTATTGCACATGCAAATTGGCTCAACTCTTTAAAGCTTTGCTGTAA 2454 42.99 MWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTANAIFTITRMEGLRGLYAGFYPAVLGSSVSWGLYFFFYGRAKERYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVCRRSLGARQLSMVLVAAGAKMDSLCLLAAICSTPSQTSPEELLFWVLWCWFWLKKKHIGNKDGIPKGNLGWPFFGETLQFISSGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSEVNKVVLQNHGNIFIPAYPKSITELLGTFSILRMNGNVQKRVHTIIGAFLRSPQLKAQITQDIQNTVKLRLANWNSSQLVYLQTETKQITFEVLVKVLMSVGPGEELKILKREFEEFIKALICIPIKLPGTRLYKSLKAREKLLKIVSKIVEDRKSRVEEKVAPRDAVDVLLQDHDEIQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLSDCPRALAQLMEENMKLKKQKDGSGEEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDEKNYANPHQFDPWRWEENLSATNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYNFKYHLLNRRIRDGIRNPVPVSFDERWLSLNAEPHFYCTCKLAQLFKALL 817
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 34527958 34542875 + CrPI670011_04g016070.1 Cre04g1607 495911
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1607 817 Coils Coil 629 649 - -
Cre04g1607 817 Pfam Mitochondrial carrier protein 4 94 IPR018108 -
Cre04g1607 817 Pfam Mitochondrial carrier protein 212 291 IPR018108 -
Cre04g1607 817 Pfam Mitochondrial carrier protein 100 192 IPR018108 -
Cre04g1607 817 FunFam Folate transporter 1, chloroplastic 97 298 - -
Cre04g1607 817 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 739 748 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cre04g1607 817 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 345 775 - -
Cre04g1607 817 PRINTS E-class P450 group I signature 388 407 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS E-class P450 group I signature 595 612 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS E-class P450 group I signature 746 769 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS E-class P450 group I signature 702 726 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS E-class P450 group I signature 736 746 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Cre04g1607 817 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 3 295 IPR044712 GO:0006862(InterPro)|GO:0008517(PANTHER)|GO:0009941(PANTHER)|GO:0015230(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)|GO:1904947(PANTHER)
Cre04g1607 817 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 91 IPR018108 -
Cre04g1607 817 CDD CYP90-like 387 770 - -
Cre04g1607 817 Pfam Cytochrome P450 356 771 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS P450 superfamily signature 461 474 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS P450 superfamily signature 663 674 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS P450 superfamily signature 737 746 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 PRINTS P450 superfamily signature 746 757 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 FunFam folate transporter 1, chloroplastic isoform X1 1 96 - -
Cre04g1607 817 Gene3D Mitochondrial carrier domain 1 190 IPR023395 -
Cre04g1607 817 SUPERFAMILY Cytochrome P450 355 772 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 Gene3D Cytochrome P450 345 784 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre04g1607 817 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 189 IPR018108 -
Cre04g1607 817 SUPERFAMILY Mitochondrial carrier 4 291 IPR023395 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1607 Cre-Chr4:34527958 Cre07g1726 Cre-Chr7:32709784 2.10E-122 dispersed
Cre09g2446 Cre-Chr9:43809528 Cre04g1607 Cre-Chr4:34527958 1.40E-06 dispersed
Cre04g1607 Cre-Chr4:34527958 Cre09g0053 Cre-Chr9:821641 8.00E-138 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1607 K12637 - csv:101203911 791.956