Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre04g1607 | ATGTGGCAGTGGGAGAATGCCACCGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCCGCCATGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCAAATCTCCCGACTTACAAGAATACGGCTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTTGGGTCATCTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAAGAAAGATATTCTGACAATGGAAAGAAGGACCTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCTTTGGTTTGTTTTTGCACGAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTCTAAAGGGACCAGAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGGAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCCGCGGCTTCAATCACATTTATTGTTTGTCGGCGTTCACTTGGAGCTCGTCAGTTATCCATGGTATTGGTGGCAGCAGGAGCTAAGATGGATTCTTTGTGTTTACTAGCAGCCATTTGTTCAACACCATCACAAACAAGTCCAGAGGAGTTATTGTTTTGGGTTCTCTGGTGTTGGTTTTGGTTGAAGAAGAAGCATATTGGAAACAAAGATGGGATTCCTAAAGGGAATTTGGGTTGGCCTTTCTTTGGTGAAACTCTTCAATTCATTTCGTCTGGCTATTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGAATGTGTTTAAAACCAACATTTTGGGGACACCCATTATAGTATCAACTGATTCAGAGGTGAATAAGGTTGTTTTACAAAACCATGGGAATATATTTATCCCAGCTTACCCAAAATCAATAACAGAATTACTTGGTACATTTTCAATTCTAAGAATGAATGGAAATGTTCAAAAAAGAGTTCATACAATAATTGGAGCCTTCCTAAGATCCCCTCAACTCAAAGCCCAAATCACACAAGATATTCAAAACACTGTTAAACTTCGACTTGCCAATTGGAATTCCTCTCAATTGGTTTATCTCCAAACTGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCTGGCGAAGAATTGAAGATTTTGAAAAGGGAATTTGAAGAGTTTATCAAAGCTTTGATTTGTATACCCATTAAATTACCCGGAACTAGGCTATATAAATCTTTGAAGGCCAGAGAGAAGCTGTTGAAAATTGTGAGTAAGATTGTGGAAGATCGAAAGTCGAGGGTGGAGGAGAAGGTTGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACGATGAGATTCAAGGGCTACCGTTGGATTTCATCAGCAGTCACATCATAGAGTTGATGATTCCCGGCGAGGAGACGGTGCCGATGGCCATGACCCTCGCCGTCAAGTTTCTCAGTGATTGCCCCCGCGCTCTTGCCCAATTAATGGAAGAGAATATGAAACTGAAGAAGCAGAAGGATGGCTCTGGGGAGGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATCAGTGAAACATTAAGAATGGCCAATATCATCAATGGGGTTTGGAGAAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGTGTCTTGGCGTCTTTTATTTCAGTTCATATGGACGAGAAGAACTACGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGAAAATTTGTCTGCAACAAACAACCATAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCTGGCATCGAACTCGCCAGGCTCGAAATCTCAATTTTCCTTCATCATCTCGTCACTACCTACAACTTCAAGTACCATTTGCTGAACAGGCGTATCAGAGATGGCATTAGGAACCCAGTTCCTGTGTCATTTGATGAAAGATGGCTTTCCTTAAATGCTGAACCCCATTTCTATTGCACATGCAAATTGGCTCAACTCTTTAAAGCTTTGCTGTAA | 2454 | 42.99 | MWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTANAIFTITRMEGLRGLYAGFYPAVLGSSVSWGLYFFFYGRAKERYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVCRRSLGARQLSMVLVAAGAKMDSLCLLAAICSTPSQTSPEELLFWVLWCWFWLKKKHIGNKDGIPKGNLGWPFFGETLQFISSGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSEVNKVVLQNHGNIFIPAYPKSITELLGTFSILRMNGNVQKRVHTIIGAFLRSPQLKAQITQDIQNTVKLRLANWNSSQLVYLQTETKQITFEVLVKVLMSVGPGEELKILKREFEEFIKALICIPIKLPGTRLYKSLKAREKLLKIVSKIVEDRKSRVEEKVAPRDAVDVLLQDHDEIQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLSDCPRALAQLMEENMKLKKQKDGSGEEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDEKNYANPHQFDPWRWEENLSATNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYNFKYHLLNRRIRDGIRNPVPVSFDERWLSLNAEPHFYCTCKLAQLFKALL | 817 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 34527958 | 34542875 | + | CrPI670011_04g016070.1 | Cre04g1607 | 495911 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre04g1607 | 817 | Coils | Coil | 629 | 649 | - | - | |
| Cre04g1607 | 817 | Pfam | Mitochondrial carrier protein | 4 | 94 | IPR018108 | - | |
| Cre04g1607 | 817 | Pfam | Mitochondrial carrier protein | 212 | 291 | IPR018108 | - | |
| Cre04g1607 | 817 | Pfam | Mitochondrial carrier protein | 100 | 192 | IPR018108 | - | |
| Cre04g1607 | 817 | FunFam | Folate transporter 1, chloroplastic | 97 | 298 | - | - | |
| Cre04g1607 | 817 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 739 | 748 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cre04g1607 | 817 | FunFam | 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 | 345 | 775 | - | - | |
| Cre04g1607 | 817 | PRINTS | E-class P450 group I signature | 388 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | E-class P450 group I signature | 595 | 612 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | E-class P450 group I signature | 746 | 769 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | E-class P450 group I signature | 702 | 726 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | E-class P450 group I signature | 736 | 746 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 212 | 298 | IPR018108 | - | |
| Cre04g1607 | 817 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 3 | 295 | IPR044712 | GO:0006862(InterPro)|GO:0008517(PANTHER)|GO:0009941(PANTHER)|GO:0015230(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)|GO:1904947(PANTHER) | |
| Cre04g1607 | 817 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 1 | 91 | IPR018108 | - | |
| Cre04g1607 | 817 | CDD | CYP90-like | 387 | 770 | - | - | |
| Cre04g1607 | 817 | Pfam | Cytochrome P450 | 356 | 771 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | P450 superfamily signature | 461 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | P450 superfamily signature | 663 | 674 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | P450 superfamily signature | 737 | 746 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | PRINTS | P450 superfamily signature | 746 | 757 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | FunFam | folate transporter 1, chloroplastic isoform X1 | 1 | 96 | - | - | |
| Cre04g1607 | 817 | Gene3D | Mitochondrial carrier domain | 1 | 190 | IPR023395 | - | |
| Cre04g1607 | 817 | SUPERFAMILY | Cytochrome P450 | 355 | 772 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | Gene3D | Cytochrome P450 | 345 | 784 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre04g1607 | 817 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 100 | 189 | IPR018108 | - | |
| Cre04g1607 | 817 | SUPERFAMILY | Mitochondrial carrier | 4 | 291 | IPR023395 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1607 | Cre-Chr4:34527958 | Cre07g1726 | Cre-Chr7:32709784 | 2.10E-122 | dispersed | |
| Cre09g2446 | Cre-Chr9:43809528 | Cre04g1607 | Cre-Chr4:34527958 | 1.40E-06 | dispersed | |
| Cre04g1607 | Cre-Chr4:34527958 | Cre09g0053 | Cre-Chr9:821641 | 8.00E-138 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre04g1607 | K12637 | - | csv:101203911 | 791.956 |