Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1614 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGTTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGGGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 984 50.3 MSGFFTLGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFLPPRS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34589757 34590962 - CrPI670011_04g016140.1 Cre04g1614 495918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1614 327 Pfam Domain of unknown function (DUF702) 106 257 - -
Cre04g1614 327 MobiDBLite consensus disorder prediction 1 36 - -
Cre04g1614 327 MobiDBLite consensus disorder prediction 161 186 - -
Cre04g1614 327 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Cre04g1614 327 MobiDBLite consensus disorder prediction 161 180 - -
Cre04g1614 327 NCBIfam LRP1 C-terminal domain 209 256 IPR006511 -
Cre04g1614 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 321 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1614 Cre-Chr4:34589757 Cre09g1468 Cre-Chr9:28707527 7.30E-50 dispersed
Cre02g2595 Cre-Chr2:39187281 Cre04g1614 Cre-Chr4:34589757 6.90E-35 transposed
Cre05g2847 Cre-Chr5:39150394 Cre04g1614 Cre-Chr4:34589757 8.50E-29 transposed
Cre04g1614 Cre-Chr4:34589757 Cre05g2032 Cre-Chr5:32310202 2.70E-20 wgd
Cre04g1614 Cre-Chr4:34589757 Cre07g1245 Cre-Chr7:26036887 9.20E-53 wgd
Cre04g1614 Cre-Chr4:34589757 Cre08g1406 Cre-Chr8:27041455 2.00E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53506 PF05142 DUF702 2.30E-66 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1614 K27807 - csv:101207689 504.982