Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1614 | ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGTTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGGGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA | 984 | 50.3 | MSGFFTLGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFLPPRS | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34589757 | 34590962 | - | CrPI670011_04g016140.1 | Cre04g1614 | 495918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1614 | 327 | Pfam | Domain of unknown function (DUF702) | 106 | 257 | - | - | |
Cre04g1614 | 327 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cre04g1614 | 327 | MobiDBLite | consensus disorder prediction | 161 | 186 | - | - | |
Cre04g1614 | 327 | NCBIfam | putative zinc finger domain, LRP1 type | 108 | 150 | IPR006510 | - | |
Cre04g1614 | 327 | MobiDBLite | consensus disorder prediction | 161 | 180 | - | - | |
Cre04g1614 | 327 | NCBIfam | LRP1 C-terminal domain | 209 | 256 | IPR006511 | - | |
Cre04g1614 | 327 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 321 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1614 | Cre-Chr4:34589757 | Cre09g1468 | Cre-Chr9:28707527 | 7.30E-50 | dispersed | |
Cre02g2595 | Cre-Chr2:39187281 | Cre04g1614 | Cre-Chr4:34589757 | 6.90E-35 | transposed | |
Cre05g2847 | Cre-Chr5:39150394 | Cre04g1614 | Cre-Chr4:34589757 | 8.50E-29 | transposed | |
Cre04g1614 | Cre-Chr4:34589757 | Cre05g2032 | Cre-Chr5:32310202 | 2.70E-20 | wgd | |
Cre04g1614 | Cre-Chr4:34589757 | Cre07g1245 | Cre-Chr7:26036887 | 9.20E-53 | wgd | |
Cre04g1614 | Cre-Chr4:34589757 | Cre08g1406 | Cre-Chr8:27041455 | 2.00E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53506 | PF05142 | DUF702 | 2.30E-66 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1614 | K27807 | - | csv:101207689 | 504.982 |