Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1616 ATGACGAGGGGATTTCATTTTCGGTTGACTGTGGTTGTGGCGGTGATCACCATCGCCGGCCTTTCTCCGAGAGATGGCCTTACCGGAGCTGAAGCTGCCACTTCCACTTCCGCTTTCGTTCAGAACGTCATCTACTCTAACAGGATTGCTATGTTCTCCAAATCCTACTGCCCATATTGCTTGGGTGCCAAACGTATATTCAGTGAACTCCATGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGATCTCAAATTCAGAGTGTTCTACTAGACCTGACAGGAAAGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCTCTGATGATCTGAAAGCCGCGGTTGCTAGTGAGAATCCTGTTGCAAATTTCGCCCTCTACTTTAATGAGAATCTGCTTTTTTTTCTTTTTTTCCCTTTTTATTATTTGAAAGCCTCGGTGAAAAGGTGTTTGATTTGGAAGAAGAACCAGCTATCCGGTAGACAAAGTGCCTGTATTTCTCCAAGAAGCTGGAGTGAACATATTAACTTAAAATATATTTTCTTCCAGTACTCGCAGTTTGCAAGCAGCTGA 591 43.49 MTRGFHFRLTVVVAVITIAGLSPRDGLTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYCLGAKRIFSELHEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVASENPVANFALYFNENLLFFLFFPFYYLKASVKRCLIWKKNQLSGRQSACISPRSWSEHINLKYIFFQYSQFASS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34611785 34614110 - CrPI670011_04g016160.1 Cre04g1616 495920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1616 196 ProSitePatterns Glutaredoxin active site. 51 66 IPR011767 -
Cre04g1616 196 PRINTS Glutaredoxin signature 108 121 IPR014025 -
Cre04g1616 196 PRINTS Glutaredoxin signature 94 107 IPR014025 -
Cre04g1616 196 PRINTS Glutaredoxin signature 49 67 IPR014025 -
Cre04g1616 196 FunFam Glutaredoxin 2 31 131 - -
Cre04g1616 196 Gene3D Glutaredoxin 28 127 - -
Cre04g1616 196 CDD GRX_GRXh_1_2_like 48 120 - -
Cre04g1616 196 PANTHER GLUTAREDOXIN 2 32 122 - GO:0005737(PANTHER)|GO:0015038(PANTHER)|GO:0034599(PANTHER)
Cre04g1616 196 ProSiteProfiles Glutaredoxin domain profile. 37 141 - -
Cre04g1616 196 NCBIfam glutaredoxin 49 124 IPR011899 -
Cre04g1616 196 Pfam Glutaredoxin 49 111 IPR002109 -
Cre04g1616 196 SUPERFAMILY Thioredoxin-like 38 124 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1616 K03676 - - csv:101222985 228.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1616 Cre-Chr4:34611785 Cre06g2254 Cre-Chr6:30471350 4.40E-26 dispersed
Cre04g1616 Cre-Chr4:34611785 Cre01g0542 Cre-Chr1:4694117 1.70E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28