Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1619 ATGGAAGCTGCGTTGAAGATGGGTCTCGTGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTTGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG 894 50.56 MEAALKMGLVKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPAL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34622835 34623728 + CrPI670011_04g016190.1 Cre04g1619 495923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1619 297 Gene3D - 210 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre04g1619 297 PANTHER GATA TRANSCRIPTION FACTOR 43 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre04g1619 297 SMART GATA_3 213 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 MobiDBLite consensus disorder prediction 47 100 - -
Cre04g1619 297 Coils Coil 47 68 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 192 220 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 50 64 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 149 180 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 69 100 - -
Cre04g1619 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 275 - -
Cre04g1619 297 FunFam GATA transcription factor 208 292 - -
Cre04g1619 297 CDD ZnF_GATA 218 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 PIRSF Txn_fac_GATA_plant 12 294 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre04g1619 297 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1619 Cre-Chr4:34622835 Cre11g0882 Cre-Chr11:5984170 6.00E-35 dispersed
Cre04g1619 Cre-Chr4:34622835 Cre07g1257 Cre-Chr7:26388813 1.60E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1153 . 83 349 C2C2-Gata Transcription Factor Family AT5G25830 55.7 9.3e-69 257.7
Cre11g1931 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 1.8e-67 253.4
Cre04g1619 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 50.3 9.1e-42 167.5
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 2.7e-139 492.7
Cre09g1243 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.0e-135 480.7
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 5.1e-121 431.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53507 PF00320 GATA 1.20E-16 CL0167 Cre TF