Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1619 ATGGAAGCTGCGTTGAAGATGGGTCTCGTGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTTGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG 894 50.56 MEAALKMGLVKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPAL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34622835 34623728 + CrPI670011_04g016190.1 Cre04g1619 495923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1619 297 Gene3D - 210 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre04g1619 297 PANTHER GATA TRANSCRIPTION FACTOR 43 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre04g1619 297 SMART GATA_3 213 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 MobiDBLite consensus disorder prediction 47 100 - -
Cre04g1619 297 Coils Coil 47 68 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 192 220 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 50 64 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 149 180 - -
Cre04g1619 297 MobiDBLite consensus disorder prediction 69 100 - -
Cre04g1619 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 275 - -
Cre04g1619 297 FunFam GATA transcription factor 208 292 - -
Cre04g1619 297 CDD ZnF_GATA 218 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 PIRSF Txn_fac_GATA_plant 12 294 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre04g1619 297 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1619 297 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1619 Cre-Chr4:34622835 Cre11g0882 Cre-Chr11:5984170 6.00E-35 dispersed
Cre04g1619 Cre-Chr4:34622835 Cre07g1257 Cre-Chr7:26388813 1.60E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53507 PF00320 GATA 1.20E-16 CL0167 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1619 - - - 0.0