Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1619 | ATGGAAGCTGCGTTGAAGATGGGTCTCGTGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTCAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTTGAATTTAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCGCGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGACCCGGCCCTGTAG | 894 | 50.56 | MEAALKMGLVKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEEAEGEEKNNHSSVSAPLQLQQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLDPAL | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34622835 | 34623728 | + | CrPI670011_04g016190.1 | Cre04g1619 | 495923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1619 | 297 | Gene3D | - | 210 | 289 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cre04g1619 | 297 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 285 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Cre04g1619 | 297 | SMART | GATA_3 | 213 | 267 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1619 | 297 | MobiDBLite | consensus disorder prediction | 47 | 100 | - | - | |
Cre04g1619 | 297 | Coils | Coil | 47 | 68 | - | - | |
Cre04g1619 | 297 | MobiDBLite | consensus disorder prediction | 192 | 220 | - | - | |
Cre04g1619 | 297 | MobiDBLite | consensus disorder prediction | 50 | 64 | - | - | |
Cre04g1619 | 297 | MobiDBLite | consensus disorder prediction | 149 | 180 | - | - | |
Cre04g1619 | 297 | MobiDBLite | consensus disorder prediction | 69 | 100 | - | - | |
Cre04g1619 | 297 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 212 | 275 | - | - | |
Cre04g1619 | 297 | FunFam | GATA transcription factor | 208 | 292 | - | - | |
Cre04g1619 | 297 | CDD | ZnF_GATA | 218 | 266 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1619 | 297 | PIRSF | Txn_fac_GATA_plant | 12 | 294 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Cre04g1619 | 297 | ProSiteProfiles | GATA-type zinc finger domain profile. | 213 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1619 | 297 | ProSitePatterns | GATA-type zinc finger domain. | 219 | 244 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre04g1619 | 297 | Pfam | GATA zinc finger | 219 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1619 | Cre-Chr4:34622835 | Cre11g0882 | Cre-Chr11:5984170 | 6.00E-35 | dispersed | |
Cre04g1619 | Cre-Chr4:34622835 | Cre07g1257 | Cre-Chr7:26388813 | 1.60E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53507 | PF00320 | GATA | 1.20E-16 | CL0167 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1619 | - | - | - | 0.0 |