Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1625 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCAGATGAGGCTGCTCTTTGTGCAATTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGGGTTGGGCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGACAGTTGAGTTTCCAGGGGATAAATTACAAAATGATGTGAAGGACCTAAATGCAAAACCAATGGAACAGGTTGAGAAAGTGAGAAGCCAAAATGAAGAAAGGGGTGAGATTGAGAAGCACGAAGAGTTGAGGGTTTCAGTTGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGACCTAATAAAGTGATTGATTTGAACATGTAA 510 40.78 MRILCDSCESAAATLFCAADEAALCAICDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQTVEFPGDKLQNDVKDLNAKPMEQVEKVRSQNEERGEIEKHEELRVSVVKKDYSNGDGHSKRPNKVIDLNM 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34663164 34664168 - CrPI670011_04g016250.1 Cre04g1625 495929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1625 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 Gene3D Classic Zinc Finger 1 95 - -
Cre04g1625 169 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 133 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre04g1625 169 MobiDBLite consensus disorder prediction 148 162 - -
Cre04g1625 169 MobiDBLite consensus disorder prediction 148 169 - -
Cre04g1625 169 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Cre04g1625 169 FunFam B-box zinc finger protein 19 2 92 - -
Cre04g1625 169 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1625 Cre-Chr4:34663164 Cre07g1378 Cre-Chr7:28687336 6.90E-20 dispersed
Cre07g1192 Cre-Chr7:24897236 Cre04g1625 Cre-Chr4:34663164 5.60E-55 transposed
Cre04g1625 Cre-Chr4:34663164 Cre08g1404 Cre-Chr8:27022092 5.00E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53509 PF00643 zf-B_box 2.80E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1625 - - - 0.0