Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1626 ATGAAGCCTCTTCTGTTGTTTTTTGCTCTGCTCTGCGGCGGTTTATTTTCCTCCTCCGCCGACACCAGCGCCCAAACCCTACTGGAGATTCAGGCATTGATGTCCTTTAAACTTAATCTTCATGATCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCATTGGCGCCATGTGACTGGCGGGGTGTTCTTTGTACTAATAATCGAGTTACTGAGCTCCGTTTGCCTCGCCTTCAACTCTCCGGCCGATTGACCGATCAGTTGGCTAATTTGCGGATGCTGCGGAAGTTCAGTATCCGCTCTAATTTCTTCAATGGTACGATTCCCTCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTGTTTTCTTGCAGTACAATTTGTTTTCTGGTGGCCTTCCGGCGGAGTTTGGGAACTTGACTAATCTACATGTACTAAACGTGGCGGAGAATCGCCTCTCCGGTGTGATCTCCAGCGACCTTCCGGGTAGTCTGAAATATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGTATTGTGAACATGACGAACCTTCAGGTCGTTAATCTCTCTTTCAATAGGTTCGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTCGACCATAATGTGTTGGAAGGGACGTTGCCGTCGGCTCTCGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCGCTTCAAGGCGTAATTCCGGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTCATTTCCCTCTCGCAGAATGGTCTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTTTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACGGGCGTTTCCACTCTGACGGTCTTGGATTTTTCTGTCAATCATTTCTCCGGCCAGATTCCGCCTGGGATTGGGAATCTTTCAGGATTACAAGAGCTCAGAATGTCGAATAATTCGTTTCAGGGCGCGATTCCTTTAGAAATCAAGAACTGCGCCTCGATTTCGGTTATTGATTTTGAAGGGAATCGTTTAACCGGGGAGATTCCGTCGTTTTTGGGTTATATGAGAGGTTTGAAACGGTTGTCTCTCGGTGGAAATAGTTTTTCCGGCACTGTTCCGGCCAGTTTGGGAAATCTTTTGCAGCTTGAAATCTTGAATTTAGAGGACAATGGCTTGAACGGAACCCTTCCGCTGGAGCTAATGGGTCTTGGGAATTTAACAGTAATGGAACTCGGTGGGAATGAATTTTCCGGTGAGGTTCCGACTGGTATTGGCAACCTCAGTCGTCTAGAGATTTTGAATCTCAGTGCTAACAGTCTTTCTGGGACGATTCCGTCTAGTCTTGGCAATCTCTTCAAGCTAACCACTCTGGACTTGAGCAAACAAAATCTTTCTGGGGAGTTGCCATTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTAATTGCTCTACAGGAAAACAAGCTATCTGGGAGTGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGCTATTTGAATCTAAGTTCAAACGGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCGCTTGTATCTCTGTCATTATCAGACAATCACATTTCAGGGTCAATCCCTTCAGAGCTTGGTAACTGCTCTGATCTAGGAAGGTTGGAGGTCCGTTCAAATGCTCTTTCAGGCCATATTCCGGCGGATCTTTCTCGTTTATCTCATCTACAAGAGCTGGATTTGGGTAGGAATAATTTAACCGGCGAAATCCCAGAAGAGATCTCAAGTTGTTCGTCTTTAGAATCGCTCCGTCTGAACTCGAATCATCTTTCCGGTCCCATACCGGAGTCATTGTCGGAACTCTTAAACTTAACCACACTGGACCTCTCATCCAACAATTTGAGTGGTGTTATCCCTGCTAATCTTAGCTCCATTACTGGATTGGTGAGCTTAAACGTCTCAAATAATAATCTAGAAGGCGAAATTCCATCCTCTTTAGGCTCAAGATTCAACAGCTCATCTGTGTTTGCTAATAACTCTAATTTATGTGGGAAACCACTGGCTCAGAATTGTAAGGATACAGAGAAAAAGGATAAAATGAAGAGATTGATTCTATTCATTGCAGTGGCTGCTAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGGAAGAGGCTCAAAGAGAGGGCATCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCAGCAAGTGGTGGCCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCGGAAACAATCGAGGCGACAAGACAATTCGATGAAGAGAATGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAAGCTTGTTACAATGATGGCATGGTCCTCTCAATCCGCCGCCTCTCAAATGGTTCATTAGATGAAAACATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTAGGCACCGCAATCTAACTGTTCTTCGTGGCTATTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGGAACCTTGCCACTCTCCTTCAGGAAGCATCTCATCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGCTTAGCCTTTCTCCATTCATCTTCCATTATCCATGGAGATGTCAAGCCACAAAGTGTTCTCTTCGATGCAGATTTCGAAGCTCATTTGTCGGATTTTGGTTTAGACCGACTAACCGTTGCAGCCTCAGCCGAAGCATCCACGTCTACTTTGGTGGGCACATTAGGCTACATTGCCCCTGAAGCAGTGTTGACAGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGCATTGTGTTGCTCGAGATTCTAACAGGGAAGAAACCAGTAATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGCTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGATTGCTTTGCACTGCACCGGATCCTCGTGATCGGCCGACTATGTCTGATATCGTTTTCATGCTCGAAGGTTGCCGTGTCGGACCGGACATCCCTTCCTCGGCAGATCCCACCTCCCAACCGTCGCCGGCATAA 3396 46.47 MKPLLLFFALLCGGLFSSSADTSAQTLLEIQALMSFKLNLHDPLGALTAWDSSTPLAPCDWRGVLCTNNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSVFLQYNLFSGGLPAEFGNLTNLHVLNVAENRLSGVISSDLPGSLKYLDLSSNAFSGQIPRSIVNMTNLQVVNLSFNRFGGEIPASFGELQELQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALPNLQVISLSQNGLSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLTVLDFSVNHFSGQIPPGIGNLSGLQELRMSNNSFQGAIPLEIKNCASISVIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNSFSGTVPASLGNLLQLEILNLEDNGLNGTLPLELMGLGNLTVMELGGNEFSGEVPTGIGNLSRLEILNLSANSLSGTIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGSVPEGFSSLVGLRYLNLSSNGFSGQIPSNYGFLRSLVSLSLSDNHISGSIPSELGNCSDLGRLEVRSNALSGHIPADLSRLSHLQELDLGRNNLTGEIPEEISSCSSLESLRLNSNHLSGPIPESLSELLNLTTLDLSSNNLSGVIPANLSSITGLVSLNVSNNNLEGEIPSSLGSRFNSSSVFANNSNLCGKPLAQNCKDTEKKDKMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTVAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34674730 34678125 + CrPI670011_04g016260.1 Cre04g1626 495930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1626 1131 SMART LRR_typ_2 140 163 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 480 504 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 360 384 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 696 720 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 408 431 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 624 648 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 210 233 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 528 551 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 672 695 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 258 282 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 186 209 IPR003591 -
Cre04g1626 1131 SMART LRR_typ_2 576 600 IPR003591 -
Cre04g1626 1131 Gene3D Phosphorylase Kinase; domain 1 811 913 - -
Cre04g1626 1131 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cre04g1626 1131 Pfam Leucine Rich Repeat 339 360 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 578 600 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 363 384 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 411 432 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 626 648 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 315 334 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine Rich Repeat 482 504 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Gene3D Ribonuclease Inhibitor 28 162 IPR032675 -
Cre04g1626 1131 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 914 1117 - -
Cre04g1626 1131 Gene3D Ribonuclease Inhibitor 353 452 IPR032675 -
Cre04g1626 1131 Gene3D Ribonuclease Inhibitor 251 352 IPR032675 -
Cre04g1626 1131 MobiDBLite consensus disorder prediction 791 818 - -
Cre04g1626 1131 SUPERFAMILY RNI-like 310 614 - -
Cre04g1626 1131 SUPERFAMILY Protein kinase-like (PK-like) 817 1119 IPR011009 -
Cre04g1626 1131 Pfam Leucine rich repeat 650 709 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine rich repeat 506 564 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 Pfam Leucine rich repeat 187 247 IPR001611 GO:0005515(InterPro)
Cre04g1626 1131 SUPERFAMILY L domain-like 575 736 - -
Cre04g1626 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 185 - -
Cre04g1626 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 456 746 - -
Cre04g1626 1131 SUPERFAMILY L domain-like 28 303 - -
Cre04g1626 1131 ProSiteProfiles Protein kinase domain profile. 838 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1626 1131 FunFam Putative LRR receptor-like serine/threonine-protein kinase 802 913 - -
Cre04g1626 1131 Gene3D Ribonuclease Inhibitor 163 250 IPR032675 -
Cre04g1626 1131 FunFam Leucine-rich repeat receptor protein kinase EMS1 203 307 - -
Cre04g1626 1131 Pfam Protein kinase domain 848 1106 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1626 1131 FunFam Piriformospora indica-insensitive protein 2 353 450 - -
Cre04g1626 1131 Gene3D Ribonuclease Inhibitor 455 746 IPR032675 -
Cre04g1626 1131 Gene3D Transferase(Phosphotransferase) domain 1 914 1117 - -
Cre04g1626 1131 PANTHER LEUCINE RICH REPEAT KINASE 2 408 1110 IPR051420 -
Cre04g1626 1131 MobiDBLite consensus disorder prediction 796 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1626 Cre-Chr4:34674730 Cre07g1775 Cre-Chr7:33216425 3.50E-51 dispersed
Cre02g1440 Cre-Chr2:25600982 Cre04g1626 Cre-Chr4:34674730 1.50E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64068 PF00069 Pkinase 4.50E-35 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1626 - - - 0.0