Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1646 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACTCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATAATGCTGCTGCCAATCATCCTATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATGTATGTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGTGTTGGCGACATCCCGAAACAGAACAACTGATTTCAAGGCTGACATTGACATCATCTGTCCAGTGCTGACCCTTCATTTAGGGAGTGGTTCAGTGGATTATCTGCTTGTAAATAATTGTCTGTGTCCTGTCCTGCTTGTTGTAAGGCTATTGCAGAGGCCATTCATATTGGAAATTGTCCAAAAGCTGCTTTCTCAAGTGAAACTGGAAAATTCATGCTGA 1293 44.55 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYNAAANHPIDQPSAHYASNSHVCSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKVLATSRNRTTDFKADIDIICPVLTLHLGSGSVDYLLVNNCLCPVLLVVRLLQRPFILEIVQKLLSQVKLENSC 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34844307 34847561 - CrPI670011_04g016460.1 Cre04g1646 495950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1646 430 PANTHER TRANSCRIPTION FACTOR BHLH121 87 363 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cre04g1646 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983(InterPro)
Cre04g1646 430 MobiDBLite consensus disorder prediction 294 333 - -
Cre04g1646 430 Pfam Helix-loop-helix DNA-binding domain 124 174 IPR011598 GO:0046983(InterPro)
Cre04g1646 430 SMART finulus 129 179 IPR011598 GO:0046983(InterPro)
Cre04g1646 430 CDD bHLH_AtILR3_like 128 202 - -
Cre04g1646 430 MobiDBLite consensus disorder prediction 311 333 - -
Cre04g1646 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
Cre04g1646 430 MobiDBLite consensus disorder prediction 296 310 - -
Cre04g1646 430 Gene3D - 122 206 IPR036638 GO:0046983(InterPro)
Cre04g1646 430 Coils Coil 163 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1646 Cre-Chr4:34844307 Cre05g1645 Cre-Chr5:27158309 1.30E-09 dispersed
Cre06g2494 Cre-Chr6:32670696 Cre04g1646 Cre-Chr4:34844307 2.00E-07 transposed
Cre02g1460 Cre-Chr2:26416165 Cre04g1646 Cre-Chr4:34844307 3.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53513 PF00010 HLH 9.20E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1646 - - - 0.0