Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1646 | ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACTCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATAATGCTGCTGCCAATCATCCTATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATGTATGTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGTGTTGGCGACATCCCGAAACAGAACAACTGATTTCAAGGCTGACATTGACATCATCTGTCCAGTGCTGACCCTTCATTTAGGGAGTGGTTCAGTGGATTATCTGCTTGTAAATAATTGTCTGTGTCCTGTCCTGCTTGTTGTAAGGCTATTGCAGAGGCCATTCATATTGGAAATTGTCCAAAAGCTGCTTTCTCAAGTGAAACTGGAAAATTCATGCTGA | 1293 | 44.55 | MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYNAAANHPIDQPSAHYASNSHVCSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKVLATSRNRTTDFKADIDIICPVLTLHLGSGSVDYLLVNNCLCPVLLVVRLLQRPFILEIVQKLLSQVKLENSC | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 34844307 | 34847561 | - | CrPI670011_04g016460.1 | Cre04g1646 | 495950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1646 | 430 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 87 | 363 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cre04g1646 | 430 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 123 | 173 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1646 | 430 | MobiDBLite | consensus disorder prediction | 294 | 333 | - | - | |
Cre04g1646 | 430 | Pfam | Helix-loop-helix DNA-binding domain | 124 | 174 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1646 | 430 | SMART | finulus | 129 | 179 | IPR011598 | GO:0046983(InterPro) | |
Cre04g1646 | 430 | CDD | bHLH_AtILR3_like | 128 | 202 | - | - | |
Cre04g1646 | 430 | MobiDBLite | consensus disorder prediction | 311 | 333 | - | - | |
Cre04g1646 | 430 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 193 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1646 | 430 | MobiDBLite | consensus disorder prediction | 296 | 310 | - | - | |
Cre04g1646 | 430 | Gene3D | - | 122 | 206 | IPR036638 | GO:0046983(InterPro) | |
Cre04g1646 | 430 | Coils | Coil | 163 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1646 | Cre-Chr4:34844307 | Cre05g1645 | Cre-Chr5:27158309 | 1.30E-09 | dispersed | |
Cre06g2494 | Cre-Chr6:32670696 | Cre04g1646 | Cre-Chr4:34844307 | 2.00E-07 | transposed | |
Cre02g1460 | Cre-Chr2:26416165 | Cre04g1646 | Cre-Chr4:34844307 | 3.60E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53513 | PF00010 | HLH | 9.20E-09 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1646 | - | - | - | 0.0 |