Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1651 ATGGGAGTTGACAACAATCATTCCGCTAGAAGAATTGTCATAATTGTTGTTTCTTCTACGCTTTCTGTTTCCATACTCTTCTCCCTTATCCTCCTTATCTTTTTGAGAAAGAGGAAGCGAAACCAAAAGGTCAAGAGGATATTCGAAACAGCCGATCAATCCACAACCACAAATGAAATCCTGAGTATTGAGATGTTGCAATTTGATTTCGAGACTATTAAGTTAGGAACAAATGAATTCTCAAGTGAAAATAAGATCGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGTAAACTTCCTAATGGACGAGAAATAGCCGTGAAAAGACTTGCAAAAGATTCACAACAAGGAGATGTAGAATTTAGAAACGAAGTATTGTTGGTAGCCAAACTTCATCATAGAAATTTGGTTAGGCTACTTGGATTTTGCTTGCAAAAGAATGAAAGGCTTCTCATATATGAGTTTGTACAGAATGCAAGCCTTGACCACTTCATATTTGATTTTCATAATCGGATCCTTTTAGATTGGGAAACACGATACAAAATTATAAATGGTATTGCACGAGGACTTCTTTACCTTCATGAAGAATCTCGTCTCTTAATCATCCATCGTGATCTCAAACCTAGCAATATTTTGTTGGATGAGAAGATGAATCCAAAAATTGTGAATTTTGGTACAGCAAGAATGTTTGAAGTAGATGAAACTCATGGCAATACAAATAGAATTGTGGGAACTTAG 738 36.18 MGVDNNHSARRIVIIVVSSTLSVSILFSLILLIFLRKRKRNQKVKRIFETADQSTTTNEILSIEMLQFDFETIKLGTNEFSSENKIGEGGFGAVYKGKLPNGREIAVKRLAKDSQQGDVEFRNEVLLVAKLHHRNLVRLLGFCLQKNERLLIYEFVQNASLDHFIFDFHNRILLDWETRYKIINGIARGLLYLHEESRLLIIHRDLKPSNILLDEKMNPKIVNFGTARMFEVDETHGNTNRIVGT 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34890768 34894117 - CrPI670011_04g016510.1 Cre04g1651 495955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1651 245 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 156 245 - -
Cre04g1651 245 Pfam Protein kinase domain 81 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1651 245 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 245 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1651 245 SUPERFAMILY Protein kinase-like (PK-like) 58 245 IPR011009 -
Cre04g1651 245 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Cre04g1651 245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1651 245 Gene3D Transferase(Phosphotransferase) domain 1 156 245 - -
Cre04g1651 245 FunFam Cysteine-rich receptor-like protein kinase 10 38 155 - -
Cre04g1651 245 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524(InterPro)
Cre04g1651 245 ProSiteProfiles Protein kinase domain profile. 80 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1651 245 SMART serkin_6 80 243 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1651 Cre-Chr4:34890768 Cre04g1843 Cre-Chr4:36172712 9.90E-84 dispersed
Cre04g1651 Cre-Chr4:34890768 Cre04g1840 Cre-Chr4:36140352 9.60E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64070 PF00069 Pkinase 7.20E-35 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1651 - - - 0.0