Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1657 ATGAAACGAGCCAATATCATCATTCTTCAATGGAGGAAATGGAGTCACTTCCAACCCAACCCCACTCCCGCTTACTTTTCCGGCAGGTGTTACAAAACGACATGTCGTCCTACAAAGCAGGAACGATCGAAATCAAATCTCATTATAAAAGGAAATTTCCACACTCTTCTTCGCTGTCAAGTTTCACCGCCTGTTTCCGCCGCCGTTGTTCTTCCGCCCACTTTTCCCCGATGGTCTATGGTTTTCCCGACTTCAAAAACCGCCCACAGATTTCAATCCACCGGAATTCCGCCGCCAATCATGGGCTCTCTAGATAGTTCCGATGCCGGTATCGTCACCGTCGACGTCAAAACCGCCGAGAACCTCCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTTGAGGAGTTCAAGGACGGGCATGTGGCGACGGAGAAGATCGTTAATATTCCGTATCTGTTAAATTCTCCAAATGGTAGGGTGAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCGGTCTTTAAGAAAGACGACCGCCTCGTCGTGGGTTGTCGAAGCGGCGTCAGATCTTTGCTTGCTATTGATGATCTCCAAAATGATGGTTTCAAGCATTTGAAAGATCTAGGCGGAGGACATCTGGCTTGGTTGGAGAATGGATTACCTGTGGCTAAGCCAAAAGGGGATCTAAAAGAATTCGAATCTTTCCTTCCATTCAAACTCAGCAATCGGCACACCCGCCACTCAAAATCTCCTGTTGTTTCCACCGCCGTCCTTTCGCAAACTTTTCTCCGGCAGCCTCTGGTTTTTCCGACCTCAAAACCCACTCACGATCTCATCATGGCCTCCTCCGACAGTTCCAATGCCGGAGTCGTCACCGTCGACGTCGAGACGGCCAAGAAGCTGCTCGATTCCGGCTATCCTCTTCTGGACGTTAGGACCGTTGAGGAGTTCGGGAGAGGGCATGTGGCGACGGAGAAAATCGTCAATATTCCTTATCTGTTTAGTTTTGAACATGGTAGGGAAAAAAATGATCGGTTTCTAGAGGAGGTGTCGGCGGTCTTTAACAAAGACGACCGCTTCCTTGTGGTTTGCGCAATTGGTATTAGGTCTCTGGAAGCCACTCAAGAACTTCAGGATAATGCAACAAGCAAAGATTTGCAGGGAAGATCGCAGTGTTTGTGTAGCGCCAGATTTGTCTTCCATAGTTCTACCGCTTCAACGATGGTGCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGCGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTGCTGGTTACTCCTACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCCCTTAAGCATCGTCAGAACAAAAAACAGCAACAGAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAGAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGTGAAGAAGATGATGGCAAACCTGAAAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTCACGGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCGGCTGCAGCAGCCGGTGGCGTATCTGGTTTTGATTTTGGGGTTGATCCCAACTTAGATCCTGAACTTGCCCTAGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCCGCAGAGGAGAATACCAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGCTCACAGGATGCAACTATGACCGAGCGTTCTGGTCTTGCGACTTCTGATGCTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCGCTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGCCGTATCAGATGATCCTGAGTTGGCACTTGCTCTTCAGTTGTCTGTGCAGGAAGGCTCCAGTGACTCGACAAGCCAGACAGACATGAGTAAATTATTGGCCGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGCGTAGATCCAAATGATCCCTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGAAAAGAAAGACGAAGACAAATCATCAAAGGAAGATGAGAAATGA 2436 48.03 MKRANIIILQWRKWSHFQPNPTPAYFSGRCYKTTCRPTKQERSKSNLIIKGNFHTLLRCQVSPPVSAAVVLPPTFPRWSMVFPTSKTAHRFQSTGIPPPIMGSLDSSDAGIVTVDVKTAENLLHSGYAFLDVRTVEEFKDGHVATEKIVNIPYLLNSPNGRVKNAQFLAEVSAVFKKDDRLVVGCRSGVRSLLAIDDLQNDGFKHLKDLGGGHLAWLENGLPVAKPKGDLKEFESFLPFKLSNRHTRHSKSPVVSTAVLSQTFLRQPLVFPTSKPTHDLIMASSDSSNAGVVTVDVETAKKLLDSGYPLLDVRTVEEFGRGHVATEKIVNIPYLFSFEHGREKNDRFLEEVSAVFNKDDRFLVVCAIGIRSLEATQELQDNATSKDLQGRSQCLCSARFVFHSSTASTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERSGLATSDAENKAADLMDDENALLQQALAMSMDNPSATSDIRDIDMSEAVSDDPELALALQLSVQEGSSDSTSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEEKKDEDKSSKEDEK 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34929619 34944230 + CrPI670011_04g016570.1 Cre04g1657 495961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1657 811 CDD RHOD 297 381 - -
Cre04g1657 811 Gene3D - 628 714 - -
Cre04g1657 811 FunFam 26S proteasome regulatory subunit N10 628 714 - -
Cre04g1657 811 Gene3D von Willebrand factor, type A domain 411 594 IPR036465 -
Cre04g1657 811 SMART VWA_4 410 583 IPR002035 -
Cre04g1657 811 MobiDBLite consensus disorder prediction 773 811 - -
Cre04g1657 811 SUPERFAMILY vWA-like 412 583 IPR036465 -
Cre04g1657 811 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 732 751 IPR003903 -
Cre04g1657 811 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 630 649 IPR003903 -
Cre04g1657 811 FunFam 26S proteasome non-ATPase regulatory subunit 4 411 594 - -
Cre04g1657 811 MobiDBLite consensus disorder prediction 648 666 - -
Cre04g1657 811 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 290 380 IPR036873 -
Cre04g1657 811 Pfam Ubiquitin interaction motif 732 747 IPR003903 -
Cre04g1657 811 Pfam Ubiquitin interaction motif 700 713 IPR003903 -
Cre04g1657 811 Pfam Ubiquitin interaction motif 632 645 IPR003903 -
Cre04g1657 811 Pfam von Willebrand factor type A domain 414 523 IPR002035 -
Cre04g1657 811 CDD VWA_26S_proteasome_subunit 409 596 - -
Cre04g1657 811 Gene3D - 105 224 IPR036873 -
Cre04g1657 811 Gene3D - 278 388 IPR036873 -
Cre04g1657 811 Coils Coil 640 665 - -
Cre04g1657 811 MobiDBLite consensus disorder prediction 793 811 - -
Cre04g1657 811 SMART rhod_4 294 395 IPR001763 -
Cre04g1657 811 SMART rhod_4 113 222 IPR001763 -
Cre04g1657 811 Pfam Rhodanese-like domain 118 218 IPR001763 -
Cre04g1657 811 Pfam Rhodanese-like domain 297 379 IPR001763 -
Cre04g1657 811 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 111 223 IPR036873 -
Cre04g1657 811 ProSiteProfiles Rhodanese domain profile. 303 380 IPR001763 -
Cre04g1657 811 CDD RHOD 119 216 - -
Cre04g1657 811 ProSiteProfiles Rhodanese domain profile. 123 225 IPR001763 -
Cre04g1657 811 MobiDBLite consensus disorder prediction 667 687 - -
Cre04g1657 811 CDD PSMD4_RAZUL 754 800 IPR049590 -
Cre04g1657 811 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 409 810 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008540(PANTHER)|GO:0031593(PANTHER)|GO:0043161(PANTHER)
Cre04g1657 811 MobiDBLite consensus disorder prediction 648 688 - -
Cre04g1657 811 ProSiteProfiles VWFA domain profile. 413 597 IPR002035 -
Cre04g1657 811 SMART uim 732 751 IPR003903 -
Cre04g1657 811 SMART uim 700 719 IPR003903 -
Cre04g1657 811 SMART uim 630 649 IPR003903 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1657 K03029 - - csv:101221273 706.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0325 Cre-Chr10:2101581 Cre04g1657 Cre-Chr4:34929619 6.60E-159 wgd
Cre02g1492 Cre-Chr2:27058614 Cre04g1657 Cre-Chr4:34929619 2.90E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58