Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1662 ATGAGGGTGGCTAAAATGGGAGATCTTCCATTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCAGGACACTGTCAAACTCGTGCTTAAAAAAGCTACTCTCTTTCTTCCTTGTTACTCGCTGGCAAAGCCGTCGGCTCATATTGGTTCACACCCTGCCACCGGCGGTCGGGTTCCGATTTCAATGGCGCCTCCCAAAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGATTAGCGTGGCATGATGCTGGTACTTACGACGCTGAAACGAAGACCGGCGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATAACTGGCGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGTCGTGCCAGAAGAAGGCCGCCTGCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATGTCTTTTACAGGATGGGACTGACTGACAAGGATATCGTGGCATTATCTGGGGGACACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAATGACTCTCGATCCAAGGAACAACTATTGAAGCTTCCTACAGACAAGGCCTTGGTTGAGGATCCTCGGTTTTCCCAATATGTGAAGGCATACGCAAAGGATGAAGACAAGTTTTTCGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCAACGGGTCTCAAGAGCAGCGCCTCCTCCTCATGGGCAAATAAAATTCTTGTAGCTGCAATGGTAGCTGTTATGGCGATACTGAGTTACAAAAGAGCCATGTCGCCTGAGTGGGATGCCTTTCTTCCTACTCTCTTTTGA 1083 48.48 MRVAKMGDLPLVVVVVVVVVVVVVQDTVKLVLKKATLFLPCYSLAKPSAHIGSHPATGGRVPISMAPPKVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAETKTGGPDGSIRFMDELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEITGGPSIDFVPGRKDANVVPEEGRLPDANQGASHLRDVFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPTDKALVEDPRFSQYVKAYAKDEDKFFEDYAASHKKLSELGFTKPSTGLKSSASSSWANKILVAAMVAVMAILSYKRAMSPEWDAFLPTLF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34969056 34976345 - CrPI670011_04g016620.1 Cre04g1662 495966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1662 360 ProSitePatterns Peroxidases active site signature. 95 106 IPR019794 GO:0004601(InterPro)
Cre04g1662 360 SUPERFAMILY Heme-dependent peroxidases 68 314 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 FunFam L-ascorbate peroxidase, cytosolic 194 303 - -
Cre04g1662 360 ProSiteProfiles Plant heme peroxidase family profile. 153 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 ProSitePatterns Peroxidases proximal heme-ligand signature. 216 226 IPR019793 -
Cre04g1662 360 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 69 319 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 152 170 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 287 311 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 192 209 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 232 256 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 113 123 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 210 231 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 74 94 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 127 151 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 95 110 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Plant ascorbate peroxidase signature 171 183 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 FunFam Cytosolic ascorbate peroxidase 81 198 - -
Cre04g1662 360 CDD ascorbate_peroxidase 68 314 - -
Cre04g1662 360 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Haem peroxidase superfamily signature 171 183 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Haem peroxidase superfamily signature 216 231 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Haem peroxidase superfamily signature 95 109 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 PRINTS Haem peroxidase superfamily signature 153 170 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre04g1662 360 Gene3D - 81 310 - -
Cre04g1662 360 Gene3D Peroxidase, domain 2 194 303 - -
Cre04g1662 360 Pfam Peroxidase 82 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1662 K00434 - - csv:101220337 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1662 Cre-Chr4:34969056 Cre11g1063 Cre-Chr11:8063455 2.40E-14 dispersed
Cre02g0772 Cre-Chr2:4561722 Cre04g1662 Cre-Chr4:34969056 1.70E-112 transposed
Cre02g2379 Cre-Chr2:37186534 Cre04g1662 Cre-Chr4:34969056 2.50E-82 transposed
Cre08g0536 Cre-Chr8:18038352 Cre04g1662 Cre-Chr4:34969056 4.90E-60 transposed
Cre08g1278 Cre-Chr8:25928698 Cre04g1662 Cre-Chr4:34969056 1.50E-34 transposed
Cre11g1849 Cre-Chr11:30123344 Cre04g1662 Cre-Chr4:34969056 1.90E-09 transposed
Cre04g1662 Cre-Chr4:34969056 Cre08g1359 Cre-Chr8:26642739 4.30E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63