Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1677 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAGAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCGTGCGATCAACTGAGGAGGTTATTGCCATGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCGGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCATTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCTAATCTTGTAAGTAGAGCGAGCTCAGTCCAAGGCCCAACCACGTCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.14 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLRRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRSTEEVIAMQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35085522 35087475 + CrPI670011_04g016770.1 Cre04g1677 495981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1677 397 SMART PP2C_4 41 353 IPR001932 -
Cre04g1677 397 FunFam Phosphatase 2C family protein 36 365 - -
Cre04g1677 397 CDD PP2Cc 48 355 IPR001932 -
Cre04g1677 397 Gene3D - 37 366 IPR036457 -
Cre04g1677 397 Pfam Protein phosphatase 2C 80 322 IPR001932 -
Cre04g1677 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cre04g1677 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cre04g1677 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cre04g1677 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0750 Cre-Chr2:4340037 Cre04g1677 Cre-Chr4:35085522 1.70E-162 dispersed
Cre02g1523 Cre-Chr2:27503923 Cre04g1677 Cre-Chr4:35085522 4.80E-173 dispersed
Cre02g1688 Cre-Chr2:29922927 Cre04g1677 Cre-Chr4:35085522 6.30E-141 dispersed
Cre04g1677 Cre-Chr4:35085522 Cre10g2183 Cre-Chr10:36367698 1.90E-140 dispersed
Cre10g0310 Cre-Chr10:1963380 Cre04g1677 Cre-Chr4:35085522 1.30E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1677 K01102 - csv:101219696 751.895