Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1727 ATGAAATGGCGAAATGTGAGTGATGGAGAAGAGATTGAGATCTGGGTAAATGACATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACAACTTATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTTGATGGATCCCGCAAAGGGAAATAATGGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAATGATATTCTATCAAACATTGATGGCTCGTCAGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGAGTTCTTTCAGGAGCTCCAGTTGCATCTGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAACTGATAAAAATGACCCTCCAACACCTGCACCCACATCCGAGTTTCCTCGCCAAGAGAAACCATCAAAGGAACATGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCATGAACCGTTGACGCCAGATTCTGGTTGCCATAGCTCCCGGAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTAGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCATCTGGAATATCAATAGGGGACGACAACCAGTTAGACTAA 1035 44.06 MKWRNVSDGEEIEIWVNDMFQQQSAHNSSFLQNNLLVRDKHIPSDACLMDPAKGNNGTSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSNDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPETDKNDPPTPAPTSEFPRQEKPSKEHAQAKSVSIDDSFSSHHEPLTPDSGCHSSRSESPRPVKKQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDDNQLD 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35393366 35396895 - CrPI670011_04g017270.1 Cre04g1727 496031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1727 344 MobiDBLite consensus disorder prediction 310 344 - -
Cre04g1727 344 MobiDBLite consensus disorder prediction 280 294 - -
Cre04g1727 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 51 315 IPR046955 GO:0003700(InterPro)
Cre04g1727 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677(InterPro)
Cre04g1727 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 124 IPR017930 -
Cre04g1727 344 Pfam MYB-CC type transfactor, LHEQLE motif 153 199 IPR025756 -
Cre04g1727 344 MobiDBLite consensus disorder prediction 127 149 - -
Cre04g1727 344 MobiDBLite consensus disorder prediction 255 279 - -
Cre04g1727 344 Pfam Myb-like DNA-binding domain 69 120 IPR001005 -
Cre04g1727 344 Gene3D - 66 125 - -
Cre04g1727 344 MobiDBLite consensus disorder prediction 214 297 - -
Cre04g1727 344 SUPERFAMILY Homeodomain-like 66 121 IPR009057 -
Cre04g1727 344 FunFam Myb family transcription factor 66 124 - -
Cre04g1727 344 MobiDBLite consensus disorder prediction 127 143 - -
Cre04g1727 344 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1727 Cre-Chr4:35393366 Cre10g1808 Cre-Chr10:32486563 6.30E-44 dispersed
Cre04g1727 Cre-Chr4:35393366 Cre04g1728 Cre-Chr4:35400296 5.70E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53516 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1727 - - - 0.0