Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1728 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCACCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATCGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCCGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCCGGATGCAACATGTGGGGATGA 942 47.56 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCNMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35400296 35405102 - CrPI670011_04g017280.1 Cre04g1728 496032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1728 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Cre04g1728 313 MobiDBLite consensus disorder prediction 1 26 - -
Cre04g1728 313 Gene3D - 41 99 - -
Cre04g1728 313 MobiDBLite consensus disorder prediction 191 216 - -
Cre04g1728 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cre04g1728 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Cre04g1728 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Cre04g1728 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cre04g1728 313 FunFam Myb family transcription factor 41 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0200 Cre-Chr1:1398275 Cre04g1728 Cre-Chr4:35400296 3.70E-32 dispersed
Cre04g1728 Cre-Chr4:35400296 Cre05g0421 Cre-Chr5:3812518 1.00E-45 dispersed
Cre04g1727 Cre-Chr4:35393366 Cre04g1728 Cre-Chr4:35400296 5.70E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53517 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1728 - - - 0.0