Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1741 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAGTCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCGGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAGTATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGCAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGTGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCTCCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCCGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG 1839 43.94 MASIAGSKASSSQPQKPANGVMANGKDTGLLPRQISKSSKPASVTSDQSKSVKSISKKDMEICPDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35499566 35502901 + CrPI670011_04g017410.1 Cre04g1741 496045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1741 612 MobiDBLite consensus disorder prediction 1 19 - -
Cre04g1741 612 MobiDBLite consensus disorder prediction 162 190 - -
Cre04g1741 612 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cre04g1741 612 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Cre04g1741 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1741 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cre04g1741 612 MobiDBLite consensus disorder prediction 115 140 - -
Cre04g1741 612 MobiDBLite consensus disorder prediction 1 76 - -
Cre04g1741 612 MobiDBLite consensus disorder prediction 89 140 - -
Cre04g1741 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Cre04g1741 612 CDD STKc_phototropin_like 216 577 - -
Cre04g1741 612 PANTHER FLIPPASE KINASE 1-RELATED 78 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1741 612 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cre04g1741 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1741 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1741 612 MobiDBLite consensus disorder prediction 100 114 - -
Cre04g1741 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cre04g1741 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cre04g1741 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1741 612 MobiDBLite consensus disorder prediction 31 51 - -
Cre04g1741 612 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1079 Cre-Chr4:29504222 Cre04g1741 Cre-Chr4:35499566 1.30E-149 dispersed
Cre04g1741 Cre-Chr4:35499566 Cre10g1529 Cre-Chr10:29217918 1.10E-184 dispersed
Cre04g0169 Cre-Chr4:4533337 Cre04g1741 Cre-Chr4:35499566 6.00E-151 transposed
Cre11g0773 Cre-Chr11:4933124 Cre04g1741 Cre-Chr4:35499566 7.80E-115 transposed
Cre01g1029 Cre-Chr1:16858212 Cre04g1741 Cre-Chr4:35499566 2.60E-226 wgd
Cre02g0647 Cre-Chr2:3412628 Cre04g1741 Cre-Chr4:35499566 8.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64075 PF00069 Pkinase 6.50E-38 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1741 K08286 - csv:101209748 1107.05