Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1788 ATGATGAATTTTGGAAATCAAAATAATAATAATAATAATAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACGCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACCGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 1026 42.01 MMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGEAFDRNGSSEEEVDINGNAIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35812840 35816035 + CrPI670011_04g017880.1 Cre04g1788 496092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1788 341 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677(InterPro)
Cre04g1788 341 SMART ELK_2 223 244 IPR005539 GO:0003677(InterPro)
Cre04g1788 341 Pfam ELK domain 223 244 IPR005539 GO:0003677(InterPro)
Cre04g1788 341 FunFam Homeobox protein knotted-1-like 2 248 310 - -
Cre04g1788 341 SMART KNOX1_2 86 130 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre04g1788 341 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre04g1788 341 Pfam KNOX1 domain 88 126 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre04g1788 341 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677(InterPro)
Cre04g1788 341 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre04g1788 341 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre04g1788 341 SMART KNOX2_2 135 186 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre04g1788 341 Gene3D - 248 310 - -
Cre04g1788 341 CDD homeodomain 255 307 IPR001356 GO:0003677(InterPro)
Cre04g1788 341 SMART HOX_1 245 310 IPR001356 GO:0003677(InterPro)
Cre04g1788 341 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre04g1788 341 SUPERFAMILY Homeodomain-like 245 319 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1788 Cre-Chr4:35812840 Cre05g1932 Cre-Chr5:31489712 8.60E-78 dispersed
Cre02g0555 Cre-Chr2:2630237 Cre04g1788 Cre-Chr4:35812840 1.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53521 PF03791 KNOX2 5.20E-20 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1788 - - - 0.0