Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre04g1788 | ATGATGAATTTTGGAAATCAAAATAATAATAATAATAATAATAATAGTAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACGCGATCGATCCTCAGGCGGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACCGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA | 1026 | 42.01 | MMNFGNQNNNNNNNNSNGLCSMMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGEAFDRNGSSEEEVDINGNAIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35812840 | 35816035 | + | CrPI670011_04g017880.1 | Cre04g1788 | 496092 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre04g1788 | 341 | ProSiteProfiles | ELK domain profile. | 223 | 243 | IPR005539 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | SMART | ELK_2 | 223 | 244 | IPR005539 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | Pfam | ELK domain | 223 | 244 | IPR005539 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | FunFam | Homeobox protein knotted-1-like 2 | 248 | 310 | - | - | |
Cre04g1788 | 341 | SMART | KNOX1_2 | 86 | 130 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre04g1788 | 341 | Pfam | KNOX2 domain | 138 | 184 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre04g1788 | 341 | Pfam | KNOX1 domain | 88 | 126 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre04g1788 | 341 | ProSiteProfiles | 'Homeobox' domain profile. | 243 | 306 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 105 | 313 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre04g1788 | 341 | Pfam | Homeobox KN domain | 263 | 302 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre04g1788 | 341 | SMART | KNOX2_2 | 135 | 186 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre04g1788 | 341 | Gene3D | - | 248 | 310 | - | - | |
Cre04g1788 | 341 | CDD | homeodomain | 255 | 307 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | SMART | HOX_1 | 245 | 310 | IPR001356 | GO:0003677(InterPro) | |
Cre04g1788 | 341 | ProSitePatterns | 'Homeobox' domain signature. | 281 | 304 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre04g1788 | 341 | SUPERFAMILY | Homeodomain-like | 245 | 319 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1788 | Cre-Chr4:35812840 | Cre05g1932 | Cre-Chr5:31489712 | 8.60E-78 | dispersed | |
Cre02g0555 | Cre-Chr2:2630237 | Cre04g1788 | Cre-Chr4:35812840 | 1.20E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53521 | PF03791 | KNOX2 | 5.20E-20 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre04g1788 | - | - | - | 0.0 |