Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1794 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCCTGGCGAACTGCGCCGTGGGGTTCGGCAGCGACGCCACGGGAGGCAAATTCGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTGATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGTGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGCGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCCAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCTCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGGTAAACCTTGTTGA 1134 47.97 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALANCAVGFGSDATGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMVITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLGKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35853262 35856257 + CrPI670011_04g017940.1 Cre04g1794 496098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1794 377 PANTHER PECTATE LYASE 18-RELATED 19 373 IPR045032 GO:0030570(InterPro)
Cre04g1794 377 SMART amb_all 103 300 IPR002022 -
Cre04g1794 377 Pfam Pectate lyase 110 294 IPR002022 -
Cre04g1794 377 Gene3D - 29 370 IPR012334 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Cre04g1794 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Cre04g1794 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1794 Cre-Chr4:35853262 Cre08g1690 Cre-Chr8:29305832 1.30E-119 dispersed
Cre03g0742 Cre-Chr3:6296402 Cre04g1794 Cre-Chr4:35853262 1.40E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1794 K01728 - csv:101210816 708.368