Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1796 ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTACCCGACGAGAATCGGCTGGCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCTATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAGACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACCACAAAATCAGGCTTCCGAACCCGCTCATGAACGAGAGATTGGGGAGAAGAAATCAACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACATGGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACCCGGAAATCACGGCTCCTTCCGATCACGAAAATTCAAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAGAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCAGTGGGTTGCCCAGTTCGCAAACAAGTCCAACGTTGTGCTGAAGATAGGAGTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCATACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGTCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAACAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGGGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAATACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA 1869 47.99 MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLPDENRLAVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDRRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQPQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNMGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHPEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAVVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35873961 35876327 + CrPI670011_04g017960.1 Cre04g1796 496100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1796 622 MobiDBLite consensus disorder prediction 271 299 - -
Cre04g1796 622 MobiDBLite consensus disorder prediction 586 622 - -
Cre04g1796 622 MobiDBLite consensus disorder prediction 532 549 - -
Cre04g1796 622 Coils Coil 144 178 - -
Cre04g1796 622 Gene3D WRKY domain 332 409 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1796 622 MobiDBLite consensus disorder prediction 231 270 - -
Cre04g1796 622 Pfam WRKY DNA -binding domain 349 406 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1796 622 MobiDBLite consensus disorder prediction 202 223 - -
Cre04g1796 622 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 132 591 IPR044810 GO:0003700(InterPro)
Cre04g1796 622 FunFam probable WRKY transcription factor 31 332 409 - -
Cre04g1796 622 MobiDBLite consensus disorder prediction 532 553 - -
Cre04g1796 622 MobiDBLite consensus disorder prediction 318 332 - -
Cre04g1796 622 ProSiteProfiles WRKY domain profile. 342 408 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1796 622 SMART WRKY_cls 347 407 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre04g1796 622 MobiDBLite consensus disorder prediction 192 337 - -
Cre04g1796 622 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1796 Cre-Chr4:35873961 Cre06g2502 Cre-Chr6:32726927 1.10E-43 dispersed
Cre02g0538 Cre-Chr2:2506541 Cre04g1796 Cre-Chr4:35873961 1.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53522 PF03106 WRKY 3.60E-24 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1796 - - - 0.0