Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1806 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATATCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCGACTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCATGAGTTCCGAAATGGAGGTCCTACAAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTAGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTGTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGTGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATGGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGTGATTTATATCCAATAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGTCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGAGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 1908 42.14 MGKKKLSLQNQGSHVILDNGLLKVTISNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSTQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSLYFMANERGSISGRLLVQDRFISSSPIPVRDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYGPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLYPINDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35926737 35930316 + CrPI670011_04g018060.1 Cre04g1806 496110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1806 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 IPR051850 -
Cre04g1806 635 Pfam Polysaccharide lyase family 4, domain II 360 427 IPR029413 -
Cre04g1806 635 CDD RGL4_C 443 630 - -
Cre04g1806 635 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Cre04g1806 635 CDD RGL4_M 332 429 IPR029413 -
Cre04g1806 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cre04g1806 635 CDD RGL4_N 6 299 - -
Cre04g1806 635 Gene3D - 439 629 - -
Cre04g1806 635 Gene3D - 329 431 - -
Cre04g1806 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cre04g1806 635 Gene3D - 6 303 IPR014718 GO:0030246(InterPro)
Cre04g1806 635 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre04g1806 635 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1806 Cre-Chr4:35926737 Cre11g1890 Cre-Chr11:30650641 1.10E-198 dispersed
Cre04g1806 Cre-Chr4:35926737 Cre08g1094 Cre-Chr8:24072451 4.20E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1806 K18195 - csv:101220336 1234.17