Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1827 ATGATCTCTTCACTGAGGCTTACATCTTCCAATTACACTTCCTCTGAAATTTTGAACAGAAAATCTCCAGTTCTGAGGCCGAATCTTCCATTGCAGTCCCCGGATTGCAGTGCCCTTAAACATGTCGATCGGTCTCTTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAAAATCTTTCTTTGCCCACAAAATCATCGGAGCGTTCGACGGTGTGCATGGCTTACGAGGCCGAATCGCGGCCTCTGCAGATTAACATTGAGATTCCTGATGAACAAACGGCTCAGAAACTCAAAATTGGACTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTATCCTTGGCTCACTTCCACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTCGTTTCTTGGGCGACTCGAATGGTCGATGCTCCCAAAACCGATTTAGATTTCTGGAAATCCCTATTTCCGGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTTAGCGTGCTGGTCTCTAGGTTTCTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTTATCCCAATCATCGGAGGGTGCGCTCTTTCCGCCATCACTGAGCTCAATTTCAACATGATTGGTTTCTCGGGAGCGATGGTATCGAACTTGGCATTTGTGTTTAGAAACATATTTTCGAAGAAAGGGATGAAGGGAAAGTCAGTTAGTGGGATGAATTACTATGCTTGCCTCTCATTGCTCTCTCTGCTAATTCTTACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCGCCATTGACATTCAGCGTTGGTAACACAATGAAGAGAATATTCGTAATAGTATCGTCCATTATCATCTTCCACACGCCTATCCGACCCGTAAACGCCATTGGAGCTGCCATTGCAATCCTTGGAACGTTCCTCTACTCGCAGGCAAAGCTGTGA 1176 46.0 MISSLRLTSSNYTSSEILNRKSPVLRPNLPLQSPDCSALKHVDRSLSTNKPLHISSVENLSLPTKSSERSTVCMAYEAESRPLQINIEIPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRMVDAPKTDLDFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAITELNFNMIGFSGAMVSNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIRPVNAIGAAIAILGTFLYSQAKL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36055411 36057263 - CrPI670011_04g018270.1 Cre04g1827 496131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1827 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cre04g1827 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre04g1827 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Cre04g1827 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 234 - -
Cre04g1827 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 284 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1827 Cre-Chr4:36055411 Cre05g1573 Cre-Chr5:24232818 9.00E-156 dispersed
Cre04g1940 Cre-Chr4:36917519 Cre04g1827 Cre-Chr4:36055411 5.50E-63 transposed
Cre05g0332 Cre-Chr5:3069926 Cre04g1827 Cre-Chr4:36055411 3.60E-86 transposed
Cre05g2545 Cre-Chr5:36733977 Cre04g1827 Cre-Chr4:36055411 7.20E-66 transposed
Cre10g0767 Cre-Chr10:7485072 Cre04g1827 Cre-Chr4:36055411 6.30E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1827 K15283 - csv:101216621 688.337