Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1828 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCACACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACATGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCGTGCTGAGAATATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTCCGGTCGATATCGAGGCCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGTTGGTGGATATTTTCATGGATGCGACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCGAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAGCTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTATGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGTATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGTGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCGAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGTGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACGGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACTGCTAGACTTTCAATTGGATCCGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.74 MFDPDMFDTHHHMLEELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRESYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36064537 36071033 - CrPI670011_04g018280.1 Cre04g1828 496132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1828 718 SUPERFAMILY Bet v1-like 478 710 - -
Cre04g1828 718 SUPERFAMILY Bet v1-like 228 457 - -
Cre04g1828 718 Gene3D - 285 457 IPR023393 -
Cre04g1828 718 MobiDBLite consensus disorder prediction 29 54 - -
Cre04g1828 718 CDD START_ArGLABRA2_like 229 455 - -
Cre04g1828 718 Coils Coil 98 130 - -
Cre04g1828 718 SMART HOX_1 45 108 IPR001356 GO:0003677(InterPro)
Cre04g1828 718 CDD homeodomain 46 105 IPR001356 GO:0003677(InterPro)
Cre04g1828 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 713 IPR042160 -
Cre04g1828 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677(InterPro)
Cre04g1828 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Cre04g1828 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289(InterPro)
Cre04g1828 718 FunFam Homeobox-leucine zipper protein GLABRA 2 234 455 - -
Cre04g1828 718 Pfam START domain 236 455 IPR002913 GO:0008289(InterPro)
Cre04g1828 718 Gene3D - 36 120 - -
Cre04g1828 718 SMART START_1 234 456 IPR002913 GO:0008289(InterPro)
Cre04g1828 718 FunFam Homeobox-leucine zipper protein HDG1 36 120 - -
Cre04g1828 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre04g1828 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1186 Cre-Chr2:11293138 Cre04g1828 Cre-Chr4:36064537 1.30E-264 dispersed
Cre04g1828 Cre-Chr4:36064537 Cre06g0780 Cre-Chr6:1186091 7.10E-191 dispersed
Cre02g0518 Cre-Chr2:2255819 Cre04g1828 Cre-Chr4:36064537 5.30E-250 wgd
Cre03g0778 Cre-Chr3:6601693 Cre04g1828 Cre-Chr4:36064537 2.50E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53524 PF01852 START 1.70E-47 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1828 K09338 - csv:101209093 1364.75