Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1830 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAGAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTGAAAATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAGAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACATAATCGAGAAAGCCAAAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAAAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGGAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTTCTAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCGGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAGCCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGTGCGACTTTTATCCCAGGGCTGTGA 1668 48.44 MATHQPLLLQPPKTPRSRTFPTILCLAALLCSAIFITNKFIKSNPSENDLPFLHNICHKAYNPSSCIQMAASESPFPQEIRTTNGAHFLHSFLRKSIPKVINIIEKAKDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNKTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRGNAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVLDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITSPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36089652 36091407 - CrPI670011_04g018300.1 Cre04g1830 496134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1830 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cre04g1830 555 FunFam Pectinesterase 238 555 - -
Cre04g1830 555 NCBIfam pectinesterase inhibitor domain 24 173 IPR006501 GO:0004857(InterPro)
Cre04g1830 555 CDD PMEI-like_4 57 204 - -
Cre04g1830 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Cre04g1830 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 176 IPR006501 GO:0004857(InterPro)
Cre04g1830 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Cre04g1830 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Cre04g1830 555 Gene3D - 238 555 IPR012334 -
Cre04g1830 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Cre04g1830 555 PANTHER PECTINESTERASE 26 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre04g1830 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre04g1830 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1830 Cre-Chr4:36089652 Cre09g2047 Cre-Chr9:39579314 3.90E-120 dispersed
Cre04g1830 Cre-Chr4:36089652 Cre09g0131 Cre-Chr9:1568871 7.60E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1830 K01051 - csv:101216377 970.304