Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1841 ATGGGAACTCCAGAAAACCTTCTCTTCCTTTGCTTCATCGTCTTATTCATGGTTTCAACCACCGTTTCTCAAATAGAAATCAAAACCCACTTATGTTCAAACAGCGGCAACTACACCAGCAACAGCATTTACAAGCAAAATCTCGACACCCTCCTTTCCACCATCGCCTCCAACACCGAAATTGATTACGGGTTTTACAATTTCTCAGCCGGACAGCAACTCGACAAGGTTAACGCCATCGCCCTTTGCCTGGCCGATCTGACGGTGGAGAAATGCAGGAGCTGTCTCCAAAATTCGACTCGAAGGATTCTAGAGGATTGTCCCAACCAGAAGGAGGCTATCGGATGGTACACCGATTGCATGATTCGTTACTCAAATAGATCAATATTTGGCGTTGGGAACGATCAAGTGCTTAGGCCAACTTTTGTTTCCGGTCGGACTGCATCAGACGTAGTTGGGTACACTCAATCGCTAAGCAGTTTGTTGCAAAGACTGAGAAATCAGGCTGCATCTGGGGATTCTAAACACAAATTCGCAGTGGGTGAAATGCCAGCCCCTAATTTGGATACCATATTTGGGTTTCTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAATAATTGTCTCATGAAGGCCGCTGAAAATGTTCCAAATGGAAGTACAGGAACGAGGATATTTTCGACCAGCTGCTTTTTGAGATTTGAGACTAACGATCTTTTCTACAACACTCTGTCGCCGCCTCCCACTGCTGGTGGCGCTCCTTCCCCACCCATGTCGCCGCCGCCGCCTCTGCCTCCAACGCCAGAAAATACGGCTAGAACTGTTATTATCGTTGTGGTGTCTATTGTTTCAGTCATCATTGTTCTCCTTGTTGCCATTTTCATCATTCTGAGGTTGAGGAAGCGAAATAACAGAAAATCAACAGACAAATTTGAAGGTGTTATTGGGGACACCACTGACGAAATTAGCAGTGAGGAGACCATTCAATTTGATTTTGAAACCATTAAAATTGCAACAAGCGATTTCTCAAGTGAAAACAAGCTGGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAACTAGCTAACGGACAATGTATAGCAGTGAAGAGACTTGCAAATAATTCACAACAAGGAGATTTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAAAGAACTGAAAGACTTCTCATATATGAGTTCGTACCAAATGCCAGCCTTGACCAATTCATATTTGATTTTGGAAAAAGGACACAATTAGATTGGGAAAGACGATTCAAAATCATAAACGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTCCGAATCATACATCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAAGAAATGAATCCGAAGATTGCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATTTAATGCATGGCCAATTTTCAGTTAAATCAGATGTTTTTAGCTTTGGTGTTTTAATTCTTGAAATTGTGAGTGGCAAGAAAAATAGTTGCTTTCGCAATGAAGAAAAGATAGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGCTGGAACGACTAATAATGTCATAGATTCAACACTTGGCGTTGGTTCTAGTGTTGAAATGTTAAGATGCATTCACATTGGATTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAACGATGGCTACGGTAGTTCTAATGCTTAGTAGCATCTCTCTTACTCTTCCAGTACCTTTGGAACCAGCATTCTTCATGCACACTAACATGGATGAATCCAACACACATTCAAAGAGAAATCAGTGCCAGCCTTTTTTTGACAAAGGCAATTACACCACTAACAGCCCTTTCAAGAAATATCTCGACACCCTACTTCTCTATATCTCTTCCAACAACCAGGTCGATTCCCGTTTCTATAATGCCTCCTCCGGCGAAAATCCCGACAGAGCCACCGTTATGGCTCTTTGTCGTGGAAATGTTCCGTTAGAAAAATGCAGAAGTTGCGTGAATGACTCAGCCCACAGGATTATGCAAGATTGTCCGACCCAGAAGGAAGCTGTGGGATGGTATCCCGATTGCCAAATTCGCTACTCAAACAACTCTATTTACGGTCTTAGAGACAGCTCTGTGATGCGAGCATATATGAACGTTCAATCCTCAGACCCAATCGGTTTCAGTCAGACACTGAGGAGCTTGCTGGATAGACTGCGAGACGAGGCTGCGTCAGGGACTTCTATTAAAAAATCTGCGGCCGGTAAATTGGCGGTTCCGAGTCCCAGTTTGGATACGATACCACTTGTTGATTGTTTTCCTGATTTGTCATCGTTGGATTGTAATGGTTGCCTCAGTCAGCTTCAAACCTATATTCCCAATTGTTGTAATGCCAGCATAGCGGCGAGAATAACTGTAACTAGTTGCCAATTGAATTATGAGATCCAACCTTTCTTTGAGTTGTCTCCGCCTCCACCACCATCCCTGCCTCCGTCCGCTGCAGAGCCTCCACCTTCATTTGTTAAAGCCCCCTCCCCATCTTCATCTTCAAACGAGGGAAGTAATGGCAATACAGCTAGAACGGTTATAATTGTTGTGGTGTCCATCGTTTCGGCCATCATTCTCACTGTTGGCATTTGCATCATTTTGACATTGAGGACGCGAAAGCACAAAATACTACAAAAGTTTGAAAGTGTTGCTCTTGGAGATGCCACTAATAAGATTAGCACTGCGGAGACGATTCAATTTGATTTTGACACCATTAAAATTGCAACAAATGACTTCTCAAGTGAAAATAAGCTAGGACAGGGTGGATTTGGAGCTGTTTACATGGAGGTGAAAGACTTCTCATGTATGAATTTGTACCAAATGGCAGCCTTGACCACTTCATATTTGATTTTGGAAAGTAGACACTCCTAG 3042 42.77 MGTPENLLFLCFIVLFMVSTTVSQIEIKTHLCSNSGNYTSNSIYKQNLDTLLSTIASNTEIDYGFYNFSAGQQLDKVNAIALCLADLTVEKCRSCLQNSTRRILEDCPNQKEAIGWYTDCMIRYSNRSIFGVGNDQVLRPTFVSGRTASDVVGYTQSLSSLLQRLRNQAASGDSKHKFAVGEMPAPNLDTIFGFLQCTPDLSSVDCNNCLMKAAENVPNGSTGTRIFSTSCFLRFETNDLFYNTLSPPPTAGGAPSPPMSPPPPLPPTPENTARTVIIVVVSIVSVIIVLLVAIFIILRLRKRNNRKSTDKFEGVIGDTTDEISSEETIQFDFETIKIATSDFSSENKLGQGGFGAVYKGKLANGQCIAVKRLANNSQQGDFEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFIFDFGKRTQLDWERRFKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEIVSGKKNSCFRNEEKIEDLSSFAWKNWKAGTTNNVIDSTLGVGSSVEMLRCIHIGLLCVQENAADRPTMATVVLMLSSISLTLPVPLEPAFFMHTNMDESNTHSKRNQCQPFFDKGNYTTNSPFKKYLDTLLLYISSNNQVDSRFYNASSGENPDRATVMALCRGNVPLEKCRSCVNDSAHRIMQDCPTQKEAVGWYPDCQIRYSNNSIYGLRDSSVMRAYMNVQSSDPIGFSQTLRSLLDRLRDEAASGTSIKKSAAGKLAVPSPSLDTIPLVDCFPDLSSLDCNGCLSQLQTYIPNCCNASIAARITVTSCQLNYEIQPFFELSPPPPPSLPPSAAEPPPSFVKAPSPSSSSNEGSNGNTARTVIIVVVSIVSAIILTVGICIILTLRTRKHKILQKFESVALGDATNKISTAETIQFDFDTIKIATNDFSSENKLGQGGFGAVYMEVKDFSCMNLYQMAALTTSYLILESRHS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36148341 36154507 + CrPI670011_04g018410.1 Cre04g1841 496145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1841 1013 MobiDBLite consensus disorder prediction 865 896 - -
Cre04g1841 1013 ProSiteProfiles Gnk2-homologous domain profile. 751 859 IPR002902 -
Cre04g1841 1013 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524(InterPro)
Cre04g1841 1013 Gene3D Phosphorylase Kinase; domain 1 932 991 - -
Cre04g1841 1013 Gene3D Phosphorylase Kinase; domain 1 307 418 - -
Cre04g1841 1013 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1841 1013 SMART serkin_6 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1841 1013 MobiDBLite consensus disorder prediction 250 268 - -
Cre04g1841 1013 ProSiteProfiles Gnk2-homologous domain profile. 643 746 IPR002902 -
Cre04g1841 1013 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Cre04g1841 1013 FunFam Cysteine-rich receptor-like protein kinase 28 419 621 - -
Cre04g1841 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1841 1013 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Cre04g1841 1013 FunFam Cysteine-rich receptor-like protein kinase 10 302 418 - -
Cre04g1841 1013 MobiDBLite consensus disorder prediction 865 884 - -
Cre04g1841 1013 MobiDBLite consensus disorder prediction 246 268 - -
Cre04g1841 1013 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Cre04g1841 1013 Pfam Salt stress response/antifungal 766 855 IPR002902 -
Cre04g1841 1013 Pfam Salt stress response/antifungal 152 237 IPR002902 -
Cre04g1841 1013 Pfam Salt stress response/antifungal 646 743 IPR002902 -
Cre04g1841 1013 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
Cre04g1841 1013 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1841 1013 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 141 629 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1841 1013 CDD STKc_IRAK 349 616 - -
Cre04g1841 1013 SUPERFAMILY Protein kinase-like (PK-like) 331 650 IPR011009 -
Cre04g1841 1013 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Cre04g1841 1013 Gene3D - 643 745 IPR038408 -
Cre04g1841 1013 Gene3D - 752 859 IPR038408 -
Cre04g1841 1013 Gene3D - 138 239 IPR038408 -
Cre04g1841 1013 Gene3D - 24 128 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1841 Cre-Chr4:36148341 Cre04g1843 Cre-Chr4:36172712 4.50E-199 dispersed
Cre04g1840 Cre-Chr4:36140352 Cre04g1841 Cre-Chr4:36148341 9.40E-281 tandem
Cre04g1841 Cre-Chr4:36148341 Cre04g1842 Cre-Chr4:36164430 3.10E-184 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64080 PF00069 Pkinase 4.50E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1841 - - - 0.0