Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1846 ATGTTCTGTTTCCTCGATTACAGATCTTTGCCAATTTCGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTCGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCTGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCAATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAACATTGACGGGCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGCTAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCGTAACGTATGAGCAATATCTTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCAACGGTTGCAGCAGTAGCAATTCTTGCAAGTCTATCGAATTGTTTACTTTTGTCAAAGAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGAGATGCGAAGTCCGCAGAATTGATGAAGCAAGATTTGCATTCACGAGATAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGACTTGGAGAAGGTGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTGAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCCAGAATTTTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTAAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTAGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCGATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG 1959 43.49 MFCFLDYRSLPISLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDQCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRNIDGPDLLSQMASEAAELEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSVTYEQYLFYQLPASCQGLSAKMIVAITISTVAAVAILASLSNCLLLSKKRRQEMDTGEQVLLRNLGDAKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLRSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36187340 36190351 - CrPI670011_04g018460.1 Cre04g1846 496150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1846 652 Pfam Protein tyrosine and serine/threonine kinase 338 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1846 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1846 652 Gene3D - 31 129 IPR038408 -
Cre04g1846 652 Gene3D - 140 238 IPR038408 -
Cre04g1846 652 CDD STKc_IRAK 340 605 - -
Cre04g1846 652 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Cre04g1846 652 FunFam Uncharacterized protein 410 611 - -
Cre04g1846 652 SUPERFAMILY Protein kinase-like (PK-like) 316 633 IPR011009 -
Cre04g1846 652 ProSiteProfiles Protein kinase domain profile. 334 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1846 652 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Cre04g1846 652 Gene3D Transferase(Phosphotransferase) domain 1 410 613 - -
Cre04g1846 652 Pfam Salt stress response/antifungal 159 236 IPR002902 -
Cre04g1846 652 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Cre04g1846 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 156 621 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1846 652 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Cre04g1846 652 SMART serkin_6 334 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1846 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1846 Cre-Chr4:36187340 Cre04g1848 Cre-Chr4:36200396 1.20E-115 dispersed
Cre04g1845 Cre-Chr4:36182559 Cre04g1846 Cre-Chr4:36187340 6.70E-89 tandem
Cre04g1846 Cre-Chr4:36187340 Cre04g1847 Cre-Chr4:36193586 5.80E-208 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64085 PF07714 PK_Tyr_Ser-Thr 1.70E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1846 - - - 0.0