Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1847 ATGATTCATTTCCTCATTCAAACACCTTCTCCCTTGCCTTTAACTTTACTGCTTCTGATTTCAATATCTGGATTCATAGTCCCTTGTTGTACCCAACGTTATTTATACTGCTCAGGATCCAACACGGCTCACCCCAATCTAAATTCTGACATTCATTTCCTATTGAATTCCTTGGTCTCTCGAGCTTCTTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTCGTACCTGCGTCGAAGGAGCTAGTCAACAAATCAAGGTCGACTGCGCATCACAAACAAACGGTACCATAGGCTTTGATGAATGCATGTTGAGATACTCAGCTGTGAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAATACTGCTATATAACAGTCTGAACCAATCTACTTTTGAAGATCGTGATTTCGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCAGGGGGTGGATCAGAGATTTGGATTTGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAATTTTGGTGGATTATGCAAAGGGATGTTGCCTAAGGCAAAGAGGATGGCGAGTTTTACCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCTTTGCCACTTGATGAAGAAGGAGGGAACAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTACTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGACCCCTCACTGAGGCAACATTTTGATGCAACAAATCACGACAATGATGGAGATATGCATTACTTCAACTTTAATACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGGTGGGTGGTGAGGAAGTAGCAGTTAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGCAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAAAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGCTTTCTGAACATGGACAGAACGCAGAACCTTCTGTCATATGCGTGGGAGCTATGGAGTGAAGGTAGAGCAGAAGAAATCATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGTCAATGGTTGTTCTAATACTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACGACTGAAACAGGGACAAGGTTACACACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1968 42.28 MIHFLIQTPSPLPLTLLLLISISGFIVPCCTQRYLYCSGSNTAHPNLNSDIHFLLNSLVSRASSRTFYTETSNGIHGLFLCRGDLPNEACRTCVEGASQQIKVDCASQTNGTIGFDECMLRYSAVNFFGVLETAPRILLYNSLNQSTFEDRDFVDLALVSNLVRDATNADLMFKEGEVNVQGVDQRFGFAQCTRDIIKRDCEVCLTILVDYAKGCCLRQRGWRVLPPNCNLRVEAFRFYGIPGPPSLPLDEEGGNRTRIIVISISTVAAAAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPSLRQHFDATNHDNDGDMHYFNFNTLKAATDDFSDVHKLGEGGFGPVYKGKLVGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMANTSLDAFLFDPLKCKQLDWLKRENIVNGIAKGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGRKNIGFLNMDRTQNLLSYAWELWSEGRAEEIIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMSMVVLILGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36193586 36196401 - CrPI670011_04g018470.1 Cre04g1847 496151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1847 655 SMART serkin_6 336 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1847 655 SUPERFAMILY Protein kinase-like (PK-like) 319 635 IPR011009 -
Cre04g1847 655 ProSiteProfiles Protein kinase domain profile. 336 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1847 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 155 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1847 655 Pfam Salt stress response/antifungal 158 234 IPR002902 -
Cre04g1847 655 Pfam Salt stress response/antifungal 40 123 IPR002902 -
Cre04g1847 655 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Cre04g1847 655 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Cre04g1847 655 Gene3D - 138 238 IPR038408 -
Cre04g1847 655 Gene3D - 30 127 IPR038408 -
Cre04g1847 655 Pfam Protein tyrosine and serine/threonine kinase 340 604 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1847 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Cre04g1847 655 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Cre04g1847 655 CDD STKc_IRAK 342 607 - -
Cre04g1847 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1847 655 FunFam Uncharacterized protein 412 613 - -
Cre04g1847 655 MobiDBLite consensus disorder prediction 636 655 - -
Cre04g1847 655 Gene3D Transferase(Phosphotransferase) domain 1 412 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1847 Cre-Chr4:36193586 Cre04g1858 Cre-Chr4:36262618 5.50E-113 dispersed
Cre04g1846 Cre-Chr4:36187340 Cre04g1847 Cre-Chr4:36193586 5.80E-208 tandem
Cre04g1847 Cre-Chr4:36193586 Cre04g1848 Cre-Chr4:36200396 9.30E-121 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64086 PF07714 PK_Tyr_Ser-Thr 6.80E-50 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1847 - - - 0.0