Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1848 ATGGCATTCTTTCTTCCTCTTGCTCTGTTTTTCTTTACCAGAGTTTGTGCCATCCGGCCAGTCTTTGTCCGCCATTATTGCTTGTATGATAGAGGGAACTTCACCAGCAACAGCACGTATGAGACCAACCTCAATCGTGTCCTCTACTCCATTGCCACTGCCAAAGATAGTGACTATGGCTTTTACAATTTTTCCTATGGTCGAAACTCAGACTCGGCCAATGCTATTGGCCTCTGCCGAGGCGATATGAAGTCTGATGTATGTCGAAGCTGCCTCAATGACTCTATATATCTTCTCACACAGTTATGTCCTCAGCAGAAAGAAGCAATTGGGTGGTTTGATAACTGCATGCTGCGCTATTCAAGCCATTCCATATTTGGTGCAATGGAAACTGGACCCGATTTCGTTATGTGGGCAACAGTCAATATAGCAGAGGAAACTCTGTTCAGCAAGAAGTTAAAAACGTTGCTGGATAGCTTGAAAAACAATGCCTCTTCAGGTGGTTCTCTAAAGAAGTATGCAACTGGAAACATAGCTGCACAAGGGTTATGGACAATATGTGGGCTTTTGCAGTGCACACCTGACCTGTCTCAGCTACAATGTGATGAGTGCTTAGAGTCAGCGTTACAAGCAATCCCACCATGTTGTAGTGAAGGAATGAAAGTTTTTTTACCCAGCTGTCAAGCCAGATATGAAAGTTACCTCTTCTTTGAGCCTTCTGCTGATTCGCCACCACCGCAGCTACCACCACCGCCATTAGAATTTACTGCTTCAACTAGCACCACGCCTACAGAAGCTAGGGATGATGATATTAACTCTATGGACTTCTTGCAATACGACTTTAAGACGATCAAAGATGCAACAGATGACTTTTCTACTGCAAATAAACTTGGACAAGAAGGTGGATTTGGTATCGTTTATAAGGGTAAACTTCTTAATGGACAAGAAGTGGCTGTAAAAAGGCTAGCTCCAGGTTCTCAACAAGGAGACCTCGAGTTTAAGAATGAAGTTTTATTGGTTGCTAAGCTGCAGCACCGGAATCTGGTTCGACTTCTTGGCTTTTGTTTTGAGAGAAATGAAAGACTCCTGATCTACGAGTTTTTACCTAATTCAAGCCTAGATCGTTTCATATTTGATCCAATGCAGCGCCAATATTTGGACTGGGCAAGACGTTACAAAATTATAGTAGGCATCAGTCGCGGCCTCATGTATCTACATGAAGATTCTCGATTCAAAGTCATCCATCATGATCTTAAAGCTAGTAATATATTACTAGATGCAGAACTAAATCCAAAAATTAATGATTTTGGAATGGCAAGATTGTGTTCGTTCAATCAATCCAATGGTGATACAAGTAAAATTAAAGGAACATATGGATACATGGCCCCAGAATATGCACTGTATGGGCATTTCTCAGTAAAATTAGACGTGTTTAGTTTCGGTGTGCTTCTTCTGGAGATCATAAGTGGCCAAAAGAACGGTAGCTTTCAAGATGGTGAAAATATAGAGCATCTTTTGAGTTATACATGGGAAAACTGGACGAAAGGAACGATTACAAATATCATAGACCCAATATTGAGTGGAACTTGCATTGATGAAATCATAAGATGCATTCATCTAGGGTTATTATGTGTTCAAGAAGATGCAGCTAGCAGACCAACCATGGCTTCAGTTGTTCTCATGCTGAATAGCAACTCCTTCGCTCTTCCTGTACCATCACGCCCTGGATTTTTGCTGCATAGTAAATCATCAAACATTGCACGGCATTTTAGTTCCACGGAAGGGTCGCAATTTAGCCAATCTGCCAGCATTTGTATTGAAGAAGAATCATCATATCAGTTCAACTCATTTTCTAGAAACTTGGGATGA 1869 41.31 MAFFLPLALFFFTRVCAIRPVFVRHYCLYDRGNFTSNSTYETNLNRVLYSIATAKDSDYGFYNFSYGRNSDSANAIGLCRGDMKSDVCRSCLNDSIYLLTQLCPQQKEAIGWFDNCMLRYSSHSIFGAMETGPDFVMWATVNIAEETLFSKKLKTLLDSLKNNASSGGSLKKYATGNIAAQGLWTICGLLQCTPDLSQLQCDECLESALQAIPPCCSEGMKVFLPSCQARYESYLFFEPSADSPPPQLPPPPLEFTASTSTTPTEARDDDINSMDFLQYDFKTIKDATDDFSTANKLGQEGGFGIVYKGKLLNGQEVAVKRLAPGSQQGDLEFKNEVLLVAKLQHRNLVRLLGFCFERNERLLIYEFLPNSSLDRFIFDPMQRQYLDWARRYKIIVGISRGLMYLHEDSRFKVIHHDLKASNILLDAELNPKINDFGMARLCSFNQSNGDTSKIKGTYGYMAPEYALYGHFSVKLDVFSFGVLLLEIISGQKNGSFQDGENIEHLLSYTWENWTKGTITNIIDPILSGTCIDEIIRCIHLGLLCVQEDAASRPTMASVVLMLNSNSFALPVPSRPGFLLHSKSSNIARHFSSTEGSQFSQSASICIEEESSYQFNSFSRNLG 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36200396 36203088 + CrPI670011_04g018480.1 Cre04g1848 496152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1848 622 ProSiteProfiles Protein kinase domain profile. 292 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1848 622 Pfam Salt stress response/antifungal 143 234 IPR002902 -
Cre04g1848 622 Pfam Salt stress response/antifungal 27 122 IPR002902 -
Cre04g1848 622 Gene3D Phosphorylase Kinase; domain 1 265 367 - -
Cre04g1848 622 Pfam Protein tyrosine and serine/threonine kinase 295 559 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1848 622 FunFam Cysteine-rich receptor-like protein kinase 10 255 367 - -
Cre04g1848 622 MobiDBLite consensus disorder prediction 240 267 - -
Cre04g1848 622 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 115 577 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre04g1848 622 ProSiteProfiles Gnk2-homologous domain profile. 22 125 IPR002902 -
Cre04g1848 622 SUPERFAMILY Protein kinase-like (PK-like) 276 594 IPR011009 -
Cre04g1848 622 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 20 125 - -
Cre04g1848 622 Gene3D - 21 124 IPR038408 -
Cre04g1848 622 Gene3D - 134 236 IPR038408 -
Cre04g1848 622 ProSiteProfiles Gnk2-homologous domain profile. 131 236 IPR002902 -
Cre04g1848 622 SMART serkin_6 291 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1848 622 FunFam Cysteine-rich receptor-like protein kinase 28 368 570 - -
Cre04g1848 622 CDD STKc_IRAK 300 563 - -
Cre04g1848 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1848 622 Gene3D Transferase(Phosphotransferase) domain 1 368 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0800 Cre-Chr3:6760023 Cre04g1848 Cre-Chr4:36200396 7.30E-158 dispersed
Cre04g1842 Cre-Chr4:36164430 Cre04g1848 Cre-Chr4:36200396 2.00E-152 dispersed
Cre04g1844 Cre-Chr4:36177550 Cre04g1848 Cre-Chr4:36200396 2.80E-124 dispersed
Cre04g1845 Cre-Chr4:36182559 Cre04g1848 Cre-Chr4:36200396 2.20E-132 dispersed
Cre04g1846 Cre-Chr4:36187340 Cre04g1848 Cre-Chr4:36200396 1.20E-115 dispersed
Cre04g1848 Cre-Chr4:36200396 Cre05g1675 Cre-Chr5:27974467 1.00E-97 dispersed
Cre04g1847 Cre-Chr4:36193586 Cre04g1848 Cre-Chr4:36200396 9.30E-121 tandem
Cre04g1848 Cre-Chr4:36200396 Cre04g1849 Cre-Chr4:36209916 1.20E-65 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64087 PF07714 PK_Tyr_Ser-Thr 5.50E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1848 - - - 0.0