Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1858 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCTCCTCTGTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTTAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTAGGATTCTTCAGCCCAATAAATTCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCTTAACAGAGATGGGGTTTTGACAATCGGTGACGACGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGACTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACGGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAACTATGCGTTCTACGTCTTTGTACGGTTTCAAGATTACCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCCTGTGGAATGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTCACGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTTTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTAGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCAGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAAATGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTCGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATCGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTAGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTATATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTCGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCATATAGACCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAATGACATAACGGTAAGTTAA 2565 42.34 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGFRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLLNRDGVLTIGDDGNLVVLDGNNVSVWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVHWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPTMRSTSLYGFKITPENGNTISVTFQALNDSDKLKFQILWNGKEAQQRLNEANRKWETIRLLPSHDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVPFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKMKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGIEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGILLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDITVS 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36262618 36266094 - CrPI670011_04g018580.1 Cre04g1858 496162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1858 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1858 854 Gene3D - 31 156 IPR036426 -
Cre04g1858 854 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1858 854 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1858 854 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Cre04g1858 854 CDD STKc_IRAK 547 813 - -
Cre04g1858 854 CDD B_lectin 43 159 IPR001480 -
Cre04g1858 854 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Cre04g1858 854 SMART blect_4 39 159 IPR001480 -
Cre04g1858 854 CDD PAN_AP_plant 360 433 - -
Cre04g1858 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 511 616 - -
Cre04g1858 854 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Cre04g1858 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Cre04g1858 854 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1858 854 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Cre04g1858 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
Cre04g1858 854 PIRSF SRK 5 854 IPR024171 GO:0004674(InterPro)
Cre04g1858 854 SUPERFAMILY Protein kinase-like (PK-like) 526 835 IPR011009 -
Cre04g1858 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Cre04g1858 854 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cre04g1858 854 Pfam PAN-like domain 363 417 IPR003609 -
Cre04g1858 854 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 33 825 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0830 Cre-Chr3:7052421 Cre04g1858 Cre-Chr4:36262618 5.50E-187 dispersed
Cre03g0831 Cre-Chr3:7064430 Cre04g1858 Cre-Chr4:36262618 4.50E-179 dispersed
Cre04g1847 Cre-Chr4:36193586 Cre04g1858 Cre-Chr4:36262618 5.50E-113 dispersed
Cre04g1858 Cre-Chr4:36262618 Cre05g1675 Cre-Chr5:27974467 1.50E-179 dispersed
Cre07g0973 Cre-Chr7:11506013 Cre04g1858 Cre-Chr4:36262618 8.30E-86 transposed
Cre09g0247 Cre-Chr9:2571365 Cre04g1858 Cre-Chr4:36262618 5.70E-123 transposed
Cre02g0488 Cre-Chr2:2055648 Cre04g1858 Cre-Chr4:36262618 4.30E-115 wgd
Cre03g0820 Cre-Chr3:6960579 Cre04g1858 Cre-Chr4:36262618 1.40E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64088 PF07714 PK_Tyr_Ser-Thr 4.30E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1858 - - - 0.0