Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1889 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTCGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGACTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGTAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATATGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAGATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTGAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGAGAGAGCCCGAATTTCGGCCCCCAATCTCTGAGATTGTACAGGAACTCTTACAAATGCTGTAG 2193 44.37 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFASLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGTPGSNGARTFFSVKRIIWIVIIGTVILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNMSFRKDLTESSSISIDDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMREPEFRPPISEIVQELLQML 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36527528 36531658 - CrPI670011_04g018890.1 Cre04g1889 496193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1889 730 SUPERFAMILY Protein kinase-like (PK-like) 431 726 IPR011009 -
Cre04g1889 730 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 423 531 - -
Cre04g1889 730 SUPERFAMILY L domain-like 35 216 - -
Cre04g1889 730 SMART serkin_6 454 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1889 730 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 232 - -
Cre04g1889 730 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 726 IPR046959 -
Cre04g1889 730 Gene3D Phosphorylase Kinase; domain 1 421 531 - -
Cre04g1889 730 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Cre04g1889 730 Pfam Protein tyrosine and serine/threonine kinase 458 726 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1889 730 MobiDBLite consensus disorder prediction 319 347 - -
Cre04g1889 730 MobiDBLite consensus disorder prediction 365 385 - -
Cre04g1889 730 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Cre04g1889 730 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 532 730 - -
Cre04g1889 730 ProSiteProfiles Protein kinase domain profile. 454 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1889 730 Gene3D Transferase(Phosphotransferase) domain 1 532 730 - -
Cre04g1889 730 Gene3D Ribonuclease Inhibitor 39 234 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1889 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1889 Cre-Chr4:36527528 Cre07g1782 Cre-Chr7:33278222 5.20E-104 dispersed
Cre10g1883 Cre-Chr10:33411964 Cre04g1889 Cre-Chr4:36527528 1.80E-60 wgd
Cre02g0464 Cre-Chr2:1860602 Cre04g1889 Cre-Chr4:36527528 2.90E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre01g0871 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.6e-85 312.4
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre07g1782 . 159 853 Strubbelig Receptor Gene Family AT1G53730 60.5 5.9e-201 698.0
Cre09g0136 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.9e-186 647.9
Cre01g0871 . 9 689 Strubbelig Receptor Gene Family AT1G53730 50.7 1.8e-146 516.9
Cre07g1782 . 159 848 Strubbelig Receptor Gene Family AT3G14350 57.0 2.1e-179 626.3
Cre09g0136 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.4e-167 587.0
Cre01g0871 . 138 711 Strubbelig Receptor Gene Family AT4G22130 62.8 1.9e-178 622.9
Cre07g1782 . 532 860 Strubbelig Receptor Gene Family AT4G22130 63.7 5.2e-120 428.7
Cre09g0136 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 5.4e-117 418.7
Cre02g0464 . 483 788 Strubbelig Receptor Gene Family AT4G22130 59.9 3.8e-107 386.0
Cre04g1889 . 442 730 Strubbelig Receptor Gene Family AT4G22130 59.8 5.0e-99 359.0
Cre08g0455 . 359 706 Strubbelig Receptor Gene Family AT4G22130 51.8 6.6e-99 358.6
Cre10g1853 . 365 687 Strubbelig Receptor Gene Family AT4G22130 52.6 1.9e-93 340.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64089 PF07714 PK_Tyr_Ser-Thr 1.40E-37 CL0016 Cre PK