Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre04g1918 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACCCAGTTCCTTTCATCGTCGAACCACCTCGTAATTCTGGCTTGAAATCGAGGCCTACATCAGCTTCCGCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGCTTCATATCCAATAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAATCTCTCTGAAGTTTTCAAGGAAGCGAAATCCGACAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCTCAAGATTCAAAATCGGCCGATTCCAAGTCATCGTCGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCAAAGTTCCGGAAAGATTCTTCCTGGACCAAATATTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCCGAAGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAAATTATTAGGGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAACAATTTACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGAGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCCCAAGGATCATTACGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTGAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGTGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTCGACCCATTAGCTGATGATCCCGGAACTTATCGGTGGATGGCACCGGAGATGATCAAACATAAACCTTGTAGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCTGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATTTCAAGTGATTGTCCATTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGACAAGAGACCCGATTTCTGGCAGATTGTGAAGGTACTAGAGCAATTCGAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCTGAAACCTCGCCCTCTCCCGTGCCGAAACCGAAATTCTCAACAATGAATTCAGACATAAGCAATTCAGGTTCTATTTGGCCTGTTACAGGAGGGGGGGTTGAGTACAGTCAAGGGAAAAGAGAAGTGTTGAAGCAATGGGGGGGTTATGGGGGGGTTATGAGCTTAGGAGCTGATTTGTCAAAGATGGAACCTTTGAATGTGGAAAATGCACCGCCATTGGAGACCTTCCACACAATCCTCATCTCATCTCCTCCTTTATAA 1704 44.37 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFIVEPPRNSGLKSRPTSASATQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSDSKRFSTPTPRLRERTKEFKNKLFNKDPQDSKSADSKSSSNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETAEDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAASRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIEFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFESSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPETSPSPVPKPKFSTMNSDISNSGSIWPVTGGGVEYSQGKREVLKQWGGYGGVMSLGADLSKMEPLNVENAPPLETFHTILISSPPL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36749287 36752837 - CrPI670011_04g019180.1 Cre04g1918 496222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre04g1918 567 MobiDBLite consensus disorder prediction 125 139 - -
Cre04g1918 567 MobiDBLite consensus disorder prediction 41 80 - -
Cre04g1918 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 FunFam serine/threonine-protein kinase HT1 268 457 - -
Cre04g1918 567 MobiDBLite consensus disorder prediction 85 124 - -
Cre04g1918 567 MobiDBLite consensus disorder prediction 36 151 - -
Cre04g1918 567 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 CDD STKc_MAP3K-like 190 439 - -
Cre04g1918 567 SMART serkin_6 183 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 FunFam Kinase suppressor of Ras 1 172 266 - -
Cre04g1918 567 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Cre04g1918 567 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 SUPERFAMILY Protein kinase-like (PK-like) 168 439 IPR011009 -
Cre04g1918 567 Gene3D Transferase(Phosphotransferase) domain 1 268 458 - -
Cre04g1918 567 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre04g1918 567 PANTHER SERINE-THREONINE PROTEIN KINASE 92 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1775 Cre-Chr4:35707722 Cre04g1918 Cre-Chr4:36749287 1.10E-89 dispersed
Cre04g1918 Cre-Chr4:36749287 Cre11g1556 Cre-Chr11:25129522 9.90E-79 dispersed
Cre10g2370 Cre-Chr10:37805218 Cre04g1918 Cre-Chr4:36749287 5.30E-56 wgd
Cre03g0903 Cre-Chr3:7784446 Cre04g1918 Cre-Chr4:36749287 1.20E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64090 PF07714 PK_Tyr_Ser-Thr 4.30E-60 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre04g1918 - - - 0.0